Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060850.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.1  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   9.4  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   9.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 233 RRIPXNYRWIFRFNHDYIFVI 171
           +RIP +YR  FR    Y+ ++
Sbjct: 233 KRIPHDYRKRFRMEKIYVALV 253


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 291 AFFCCFSAVLAAFWLPSYWPPHPXQL 214
           AF+  FS+V   F +P Y    P  L
Sbjct: 33  AFYVVFSSVSTFFKIPFYSTLRPINL 58


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 291 AFFCCFSAVLAAFWLPSYWPPHPXQL 214
           AF+  FS+V   F +P Y    P  L
Sbjct: 33  AFYVVFSSVSTFFKIPFYSTLRPINL 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,781
Number of Sequences: 336
Number of extensions: 2361
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)