Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060850.seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    50   3e-07
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    28   1.4  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
 Frame = +2

Query: 329 SEPDFSEGLYGXMKMIXSSXXHRDRVYTXVENLSIKMDGQTVWVRARLQTSR-ANRQAVX 505
           +E D+S G YG + +  S+     R YT + ++S K DGQTV +RAR+ TSR    +   
Sbjct: 67  NEIDYSAGKYGDLPLNRSTA-RPGRTYTQISDISAKNDGQTVLLRARVYTSRLQGNKMCF 125

Query: 506 CVLRQTSSTVQAAG*R*RASGKXSKQXVKFTG 601
             LRQ   T+QA     + +   SKQ VK+ G
Sbjct: 126 FSLRQKYDTIQALAVVNKDT--ISKQMVKWCG 155


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 429 VSKWMVKPFGLEPVCKLLELTG 494
           + K+ VK +G  P C+++ LTG
Sbjct: 252 IGKYFVKKYGFSPNCQIIPLTG 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,203
Number of Sequences: 5004
Number of extensions: 35789
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)