Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060850.seq
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316...    28   7.9  

>10_08_0825 +
           20831170-20831349,20831380-20831547,20831627-20831698,
           20831997-20832075,20832182-20832375,20832469-20832558,
           20832851-20832940,20833196-20833282,20833477-20833560,
           20833690-20833809,20834096-20834103,20834443-20834575,
           20835044-20835125,20835330-20835496,20836006-20836493,
           20836551-20836638,20836716-20836818,20836932-20837083,
           20837191-20837316,20837459-20837529,20837691-20837753,
           20838418-20838490,20838972-20839040,20839180-20839257,
           20839434-20839484,20839586-20839696
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -2

Query: 571 LPACXLTLTSSLNCARGLPQHAXHCLPVSSRSLQT--GSNPNGLTI-HFDTQIFNXSVNP 401
           +PA      ++     GLP H    LP +S  L +  GSNP G  +   +   F    +P
Sbjct: 61  VPARAAAAAAAARAIAGLPPHEKISLPSNSEDLVSIYGSNPQGHAVDELEEVFFQEEFDP 120

Query: 400 V 398
           +
Sbjct: 121 I 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,053
Number of Sequences: 37544
Number of extensions: 212373
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)