Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060850.seq
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC006673-13|AAF39922.1|  295|Caenorhabditis elegans Hypothetical...    29   4.1  

>Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical
           protein B0464.1 protein.
          Length = 531

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 29/92 (31%), Positives = 48/92 (52%)
 Frame = +2

Query: 320 SMESEPDFSEGLYGXMKMIXSSXXHRDRVYTXVENLSIKMDGQTVWVRARLQTSRANRQA 499
           +M+ E D S+  YG   ++ +S   +   +  V+ +++    + VWVR R+ T+R+  + 
Sbjct: 42  AMDQE-DASKDFYGSYGLV-NSKEKKVLNFLKVKEINVSNATKDVWVRGRIHTTRSKGKN 99

Query: 500 VXCVLRQTSSTVQAAG*R*RASGKXSKQXVKF 595
              VLRQ   TVQ A      + K SKQ +KF
Sbjct: 100 CFLVLRQGVYTVQVAM---FMNEKISKQMLKF 128


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 126  IKILFFVYVPI*KYLIIVCTDIFIINVSFSILLLNLGGYLV 4
            + +LF   VP+  +L ++  D+ ++N  F I++LN    L+
Sbjct: 967  VPVLFACIVPVLTFLPLLYVDVPVVNHLFKIVVLNATASLI 1007


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 126  IKILFFVYVPI*KYLIIVCTDIFIINVSFSILLLNLGGYLV 4
            + +LF   VP+  +L ++  D+ ++N  F I++LN    L+
Sbjct: 967  VPVLFACIVPVLTFLPLLYVDVPVVNHLFKIVVLNATASLI 1007


>AC006673-13|AAF39922.1|  295|Caenorhabditis elegans Hypothetical
           protein K09D9.1 protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -1

Query: 371 FSYXHKVLLRSQALIPLMAELMKPYARLSFVVSQRFWQLFGCLLTGRRIPXNYRWIFR 198
           +S   K     +A + ++ EL K Y  +  VV +R         TG R P NY   FR
Sbjct: 75  YSLNKKKRWEVEAAVKMLGELQKMYNDMDVVVLERIDFRGAPFFTGLRFPDNYFEKFR 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,870,971
Number of Sequences: 27780
Number of extensions: 199233
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)