Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060850.seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    31   0.71 
At2g32250.2 68415.m03942 far-red impaired responsive protein, pu...    28   5.0  
At2g32250.1 68415.m03941 far-red impaired responsive protein, pu...    28   5.0  

>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +2

Query: 320 SMESEPDFSEGLYGXMKMIXSSXXHRDRVYTXVENLSIKMDGQTVWVRARLQTSRANRQA 499
           S+E E +     YG +           +  T V NL  ++ G  V +R RL  +R     
Sbjct: 44  SLEEEDESCSSNYGDVTTNELQSAVEGKELTDVSNLVEEIVGSEVSIRGRLHKNRLVGTK 103

Query: 500 VXCVLRQTSSTVQ 538
           +  +LR++  TVQ
Sbjct: 104 LFVILRESGFTVQ 116


>At2g32250.2 68415.m03942 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 805

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 302 PYARLSFVVSQRFWQLFGCLLTGRRIPXNYRWIFR 198
           P+A    V   R + L GC L G      Y W+FR
Sbjct: 234 PFAPFIGVSHHRQYVLLGCALIGEVSESTYSWLFR 268


>At2g32250.1 68415.m03941 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 807

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -1

Query: 302 PYARLSFVVSQRFWQLFGCLLTGRRIPXNYRWIFR 198
           P+A    V   R + L GC L G      Y W+FR
Sbjct: 234 PFAPFIGVSHHRQYVLLGCALIGEVSESTYSWLFR 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,042,298
Number of Sequences: 28952
Number of extensions: 181286
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)