Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060849.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 82 6e-17
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 51 1e-07
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 46 4e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 29 0.83
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.9
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 4.4
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 7.8
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 7.8
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 7.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 82.2 bits (194), Expect = 6e-17
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 437
GH AR+C + CY CN TGH A EC + E +CY C GH+ R+CP
Sbjct: 26 GHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE 84
Query: 438 CYNCNKSGHISRNC 479
CY C + GHI+R+C
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 75.8 bits (178), Expect = 6e-15
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Frame = +3
Query: 255 TGHFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGR 419
TGH A +C E + CY C GH+ R+C SP+ CY C + GHIAR+C G+
Sbjct: 44 TGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQ 103
Query: 420 ES--------ATQTCYNCNKSGHISRNCPDGTKTCY 503
+S + CY C GH +R+C G K CY
Sbjct: 104 QSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CY 138
Score = 71.3 bits (167), Expect = 1e-13
Identities = 31/63 (49%), Positives = 38/63 (60%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 473
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 474 NCP 482
+CP
Sbjct: 72 DCP 74
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/87 (36%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Frame = +3
Query: 258 GHFARDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR 398
GH ARDC+ + CY C GH AR+C CY+C K GH +
Sbjct: 92 GHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSF 148
Query: 399 NCPEGGRESATQTCYNCNKSGHISRNC 479
C + S Q CY CN+ GHI+ NC
Sbjct: 149 ECQQA---SDGQLCYKCNQPGHIAVNC 172
Score = 55.2 bits (127), Expect = 8e-09
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 357 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCY 503
P CYNC + GH AR C +G CYNCN++GH + C P KTCY
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCY 61
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 112 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKC 249
S P + CYKC R GH AR+C G S G +R C+ C
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYAC 121
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 15/55 (27%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNR 255
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGR 90
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQDT 264
CY C GH ARECT+G + + + +C + ++ T
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT 59
Score = 31.9 bits (69), Expect = 0.089
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 124 AMSSSVCYKCNRTGHFARECT 186
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNR 255
S+ CY C GH AR+CT G G + S F Q+ + C+KCN+
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQ 164
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 473
C+ C GHI ++C ++ D S C+ C H C + G + C+ C+++GH+S
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAK-CFICHENGHLSG 137
Query: 474 NCPDGTKTCY 503
C K Y
Sbjct: 138 QCEQNPKGLY 147
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = +3
Query: 258 GHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKTGHIARNCPEG--G 416
GH +DC E D C+RC H C+ + P + C+ C++ GH++ C + G
Sbjct: 86 GHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKG 145
Query: 417 RESATQTCYNCNKSGHISRNCPDGTK 494
C C+ H++++C K
Sbjct: 146 LYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 34.7 bits (76), Expect = 0.013
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 330 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 479
R Q + C+ C + GHI ++CPE + C+ C H C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNAC 115
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 431
+C+ C+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Frame = +3
Query: 261 HFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSCYNCNKTGHI 392
+F D E+ C+ C G GHI+++C + P C NC GHI
Sbjct: 78 YFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHI 136
Query: 393 ARNCPEGGRESATQTCYNCNKSGHISRNCP 482
A C E R+ + C C+ H S CP
Sbjct: 137 AARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPE-------------GGRESATQTCYNCNKSGHISRNCPDGTK 494
C+NC GHI+++CP R T+ C NC GHI+ C + K
Sbjct: 89 CHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 482
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +3
Query: 258 GHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 359
GH DC E + C C GHIAR+C +P
Sbjct: 318 GHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 417 RESATQTCYNCNKSGHISRNCPD 485
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +3
Query: 399 NCPEGGRESATQTCYN----CNKSGHISRNCP 482
+CP+G E T C+N C +G+IS P
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIP 97
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 414 GRESATQTCYNCNKSGHISRN--CP 482
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 342 QSPDEPSCYNCNKTGHIARN--CPEGGR 419
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 136 SVCYKCNRTGHFAREC 183
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 261 HFARDCKEEADRCYRCNGTGHIAREC 338
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 136 SVCYKCNRTGHFAREC 183
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 261 HFARDCKEEADRCYRCNGTGHIAREC 338
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -3
Query: 447 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 283
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 282 P 280
P
Sbjct: 900 P 900
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +3
Query: 330 RECAQSPDEPS-----CYNCNKTGHIARNCP 407
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 7.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 139 VCYKCNRTGHFAREC 183
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 170 SRANARRGAWCRGIPVSIGNVRSASSATDRTLCEGLQGR 286
S AW IP+S G+ R+ S+ TDR+L + R
Sbjct: 261 SSVTHENAAW--SIPLSPGDSRTHSAETDRSLLSAMSVR 297
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 411 GGRESATQTCYNCNKSG 461
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 447 SYSRSASQTPAPPRDSSVRCGPSCCSCN 364
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,384
Number of Sequences: 5004
Number of extensions: 48057
Number of successful extensions: 199
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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