Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060849.seq
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 75 3e-14
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 69 2e-12
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 68 7e-12
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 64 6e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 2e-08
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 54 9e-08
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 52 4e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 50 1e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 50 1e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 50 1e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 50 2e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 50 2e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 1e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 40 0.002
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 39 0.003
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.006
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 0.008
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.033
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.077
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.13
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.18
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 33 0.18
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.18
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.18
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.23
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.23
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.31
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.54
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.54
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 31 0.54
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.54
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.54
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 31 0.72
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 31 0.72
At3g31950.1 68416.m04046 hypothetical protein 31 0.72
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.95
At5g47430.1 68418.m05844 expressed protein 30 1.3
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.3
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.3
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.3
At4g17410.1 68417.m02607 expressed protein 30 1.3
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.3
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.3
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.3
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.7
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.2
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.2
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.2
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.2
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 2.2
At5g61670.2 68418.m07738 expressed protein 29 2.9
At5g61670.1 68418.m07737 expressed protein 29 2.9
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 2.9
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.9
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 3.8
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 3.8
At4g06479.1 68417.m00885 hypothetical protein 29 3.8
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.8
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 3.8
At2g31850.1 68415.m03889 expressed protein 29 3.8
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.0
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.0
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.0
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 5.0
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 6.7
At4g06526.1 68417.m00938 hypothetical protein 28 6.7
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 6.7
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 8.8
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 27 8.8
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 8.8
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 8.8
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 75.4 bits (177), Expect = 3e-14
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Frame = +3
Query: 258 GHFARDCKEE------------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIA 395
GHFARDC ++ + CY C G GHIAR+CA + +PS CY C +GH+A
Sbjct: 207 GHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLA 265
Query: 396 RNCPEGGRESA--TQTCYNCNKSGHISRNC 479
R+C + G CY C K GH +R C
Sbjct: 266 RDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 62.1 bits (144), Expect = 3e-10
Identities = 43/128 (33%), Positives = 51/128 (39%), Gaps = 31/128 (24%)
Frame = +3
Query: 189 GGRGVAGFRFQSAT*EVLQVQPTGHFARDC------------KEEADRCYRCNGTGHIAR 332
GG G G R TGHFARDC K D CY C GH+AR
Sbjct: 118 GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVAR 177
Query: 333 ECAQSP------------DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNCNK 455
+C Q CY C GH AR+C + G S + TCY+C
Sbjct: 178 DCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGG 237
Query: 456 SGHISRNC 479
GHI+R+C
Sbjct: 238 VGHIARDC 245
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Frame = +3
Query: 297 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 434
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 435 ---TCYNCNKSGHISRNC 479
CY C GH++R+C
Sbjct: 162 GNDGCYTCGDVGHVARDC 179
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
CY C TGHFAR+CT G + + C+ C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTC 169
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 258
CY+C +GH AR+C Q R SG C+KC ++
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKE 288
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Frame = +3
Query: 255 TGHFARDCKEEA-------DRCYRCNGTGHIARECA 341
+GH ARDC + + CY+C GH AREC+
Sbjct: 261 SGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 35.1 bits (77), Expect = 0.044
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECT 186
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
CY C GHFAR+CTQ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSC 235
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
S CY C GH +++C GG +R E C+ C
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNC 137
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKC 249
CY C GH AR+CTQ V + D + C+ C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTC 203
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 438 CYNCNKSGHISRNCPDG 488
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 133 SSVCYKCNRTGHFAREC 183
S CY C GH AR+C
Sbjct: 229 SGTCYSCGGVGHIARDC 245
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 69.3 bits (162), Expect = 2e-12
Identities = 33/74 (44%), Positives = 40/74 (54%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 437
GHFARDC C C GHIA EC E C+NC + GH+A NC G
Sbjct: 64 GHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------I 113
Query: 438 CYNCNKSGHISRNC 479
C++C KSGH +R+C
Sbjct: 114 CHSCGKSGHRARDC 127
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSP----DEPSCYNCNKTGHIARNCPEGGRES 425
GH A +C E C+ C +GH AR+C+ S D C NC K GH+A +C +
Sbjct: 102 GHVASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC------T 154
Query: 426 ATQTCYNCNKSGHISRNC 479
+ C NC SGHI+R+C
Sbjct: 155 NDKACKNCRTSGHIARDC 172
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +3
Query: 255 TGHFARDCKEEADR------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 416
+GH ARDC R C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 120 SGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN-- 174
Query: 417 RESATQTCYNCNKSGHISRNCPDG 488
C C+ SGH++R+CP G
Sbjct: 175 ----DPVCNICSISGHVARHCPKG 194
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +3
Query: 285 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 464
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 465 ISRNC 479
++ NC
Sbjct: 104 VASNC 108
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 28/103 (27%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP---------- 407
GH A DC + C C +GHIAR+C ++P C C+ +GH+AR+CP
Sbjct: 147 GHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRG 202
Query: 408 ----EGGRE--------------SATQTCYNCNKSGHISRNCP 482
+GG + SA C+NC GH + CP
Sbjct: 203 SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGGV 198
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 246
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 67.7 bits (158), Expect = 7e-12
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Frame = +3
Query: 258 GHFARDCKEEA--------DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIA 395
GHFARDC++ CY C G GHIA+ C +CY C TGH+A
Sbjct: 205 GHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLA 264
Query: 396 RNCPEGGRESA-----TQTCYNCNKSGHISRNC 479
R+C G S+ + C+ C K GH +R C
Sbjct: 265 RDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Frame = +3
Query: 291 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 440
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 441 YNCNKSGHISRNC 479
Y C +GH++R+C
Sbjct: 255 YECGGTGHLARDC 267
Score = 55.2 bits (127), Expect = 4e-08
Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 29/127 (22%)
Frame = +3
Query: 186 AGGR--GVAGFRFQSAT*EVLQVQPTGHFARDCKEEAD-----------RCYRCNGTGHI 326
+GG+ G G R E GHFARDC++ CY C GH+
Sbjct: 113 SGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHL 172
Query: 327 AREC-------------AQSPDEPSCYNCNKTGHIARNCPEGGRES---ATQTCYNCNKS 458
A++C + CY C GH AR+C + G + TCY C
Sbjct: 173 AKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGV 232
Query: 459 GHISRNC 479
GHI++ C
Sbjct: 233 GHIAKVC 239
Score = 51.2 bits (117), Expect = 6e-07
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 25/111 (22%)
Frame = +3
Query: 234 EVLQVQPTGHFARDCKEEADR-----CYRCNGTGHIAREC--------------AQSPDE 356
+ ++V G + + KE + R C+ C GH+A++C +S E
Sbjct: 70 KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129
Query: 357 PSCYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGT 491
CY C GH AR+C + GG + CY+C + GH++++C G+
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 258
CY+C TGH AR+C + G S SG KCF C ++
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKE 290
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
CY C GHFAR+C Q G + G R C+ C
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSC 166
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
CY C GHFAR+C Q G
Sbjct: 198 CYMCGGVGHFARDCRQNG 215
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECT 186
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 10/38 (26%)
Frame = +3
Query: 255 TGHFARDCKEE----------ADRCYRCNGTGHIAREC 338
TGH ARDC +++C+ C GH AREC
Sbjct: 260 TGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSG 216
CY C GH A++C G +R G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGG 187
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
S CY C GH A+ CT + S G R C++C
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYEC 257
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKC 249
S C+ C GH A++C G G S G R+ +C+ C
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMC 135
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 64.5 bits (150), Expect = 6e-11
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Frame = +3
Query: 261 HFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEG 413
H A+ C E+++ C +C GH + C + +E S CYNC TGH +CP
Sbjct: 84 HIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYP 143
Query: 414 GRESATQ--TCYNCNKSGHISRNCPDGTKTCY 503
+ T+ +C+ C GHIS+NCP+ Y
Sbjct: 144 MEDGGTKFASCFICKGQGHISKNCPENKHGIY 175
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 309 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPD 485
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPE 116
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 413
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 414 ----GRESATQTCYNCNKSGHISRNCPDGTK 494
GRES T CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +3
Query: 285 EADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 425
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 258 GHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE-S 425
GH + +C R C+ C H A++C++ D CY C KTGH A++CP+ + S
Sbjct: 175 GHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGS 231
Query: 426 ATQTCYNCNKSGH 464
C C GH
Sbjct: 232 KGAVCLRCGDFGH 244
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 297 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 473
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 474 NCPDGTK 494
+CPD K
Sbjct: 222 DCPDKYK 228
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCN 252
+S CY+C GHFAREC +S G + C++CN
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCN 362
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 11/41 (26%)
Frame = +3
Query: 258 GHFARDC-----------KEEADRCYRCNGTGHIARECAQS 347
GHFAR+C +E CYRCNG+GH AREC S
Sbjct: 334 GHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNRQDT 264
S ++CY+CN +GHFAREC VS RD + K K N++++
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENS 399
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 435 TCYNCNKSGHISRNCPDGTK 494
+CY+C + GH S NCP TK
Sbjct: 167 SCYSCGEQGHTSFNCPTPTK 186
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 54.0 bits (124), Expect = 9e-08
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 36/116 (31%)
Frame = +3
Query: 258 GHFARDCKEEADR-----------CYRCNGTGHIAREC-AQSPD---EPS---------- 362
GH+ARDC ++D C++C GH +R+C AQS + EP
Sbjct: 246 GHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGE 305
Query: 363 CYNCNKTGHIARNCP--------EGGRESATQT---CYNCNKSGHISRNCPDGTKT 497
CY C K GH +R+C + G+ +T + CY C K+GH SR+C +T
Sbjct: 306 CYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQT 361
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Frame = +3
Query: 297 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 419
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 420 -ESATQTCYNCNKSGHISRNC 479
S++ CY C K GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDC 319
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 124 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNR 255
A + + CYKC + GH+AR+CT V D+G + CFKC +
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGK 275
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +1
Query: 97 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRQ 258
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +Q
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 97 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 234
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNR 255
SS CYKC + GH++R+CT Q SG + C+KC +
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGK 347
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Frame = +3
Query: 297 CYRCNGTGHIARECA-QSPDEP-------------SCYNCNKTGHIARNCPEGGRESAT 431
CY+C GH +R+C QS ++ CY C K GH +R+C + + T
Sbjct: 306 CYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNT 364
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 458
+CY CN GH+ C P SCY C + GH C +S + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 459 GHISRNCPDGTKTCY 503
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 443
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 444 NCNKSGHISRNC 479
C + GH C
Sbjct: 81 RCGQLGHTGLAC 92
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC--------PEGGRESATQTCY 443
CYRC GH C + D+ PSC+ C + GH C PE E Q
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPD 138
Query: 444 NCN----------KSGHISRNCPDGTKTCY 503
+ + + GH CPD + C+
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCF 168
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +3
Query: 318 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNC 479
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 480 PDGTK 494
P+ ++
Sbjct: 211 PNSSQ 215
Score = 35.5 bits (78), Expect = 0.033
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Frame = +3
Query: 192 GRGVAGFRFQSAT*EVLQVQPTGHFARDCKEEADRCYR--CNGTGHIARECAQSPDEPS- 362
G + RFQ T E + GHF C + + C++ G I+ +
Sbjct: 136 GPDSSSVRFQENTRE----EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 363 -----CYNCNKTGHIARNCPEGGR 419
CY C GHIAR+CP +
Sbjct: 192 ETRRLCYECKGKGHIARDCPNSSQ 215
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 67 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 201
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEE---ADRCYRCNGTGHI 326
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 13 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 69
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 446
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 348 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 494
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQG 192
C+ C GH+AR+CT G
Sbjct: 60 CFNCGVDGHWARDCTAG 76
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Frame = +3
Query: 381 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 503
T +R P G R+ ++ C+NC GH +R+C D CY
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCY 83
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEE---ADRCYRCNGTGHI 326
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 24 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 80
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 446
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 81 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 348 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 494
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQG 192
C+ C GH+AR+CT G
Sbjct: 71 CFNCGVDGHWARDCTAG 87
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Frame = +3
Query: 381 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 503
T +R P G R+ ++ C+NC GH +R+C D CY
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCY 94
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEE---ADRCYRCNGTGHI 326
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 54 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 110
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 446
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 348 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 494
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQG 192
C+ C GH+AR+CT G
Sbjct: 101 CFNCGVDGHWARDCTAG 117
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Frame = +3
Query: 381 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 503
T +R P G R+ ++ C+NC GH +R+C D CY
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCY 124
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTG---HFARDCKEEADRCYRCNGTGHI 326
P A AR + GR G R T E + P G + +R + RC+ C GH
Sbjct: 54 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 110
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNC 404
AR+C + CY C + GHI RNC
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 348 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 479
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 258 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 350
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECTQG 192
S C+ C GH+AR+CT G
Sbjct: 98 SGRCFNCGVDGHWARDCTAG 117
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Frame = +3
Query: 381 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 503
T +R P G R++ ++ C+NC GH +R+C D CY
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCY 124
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTG---HFARDCKEEADRCYRCNGTGHI 326
P A AR + GR G R T E + P G + +R + RC+ C GH
Sbjct: 13 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 69
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNC 404
AR+C + CY C + GHI RNC
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 348 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 479
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 258 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 350
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECTQG 192
S C+ C GH+AR+CT G
Sbjct: 57 SGRCFNCGVDGHWARDCTAG 76
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Frame = +3
Query: 381 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCY 503
T +R P G R++ ++ C+NC GH +R+C D CY
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCY 83
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 476
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 477 CPDG 488
C G
Sbjct: 195 CTSG 198
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +3
Query: 189 GGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 362
GGRG G + GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 363 CYNCNKTGHIARNCPEGG 416
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 384 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 488
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 485
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +3
Query: 297 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 458
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 459 GH 464
H
Sbjct: 96 DH 97
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 142 CYKCNRTGHFAREC 183
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +3
Query: 267 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 443
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 444 NCNKSGHISRNCP 482
C GH R CP
Sbjct: 294 GCGGKGHNRRTCP 306
Score = 33.9 bits (74), Expect = 0.10
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 27/101 (26%)
Frame = +3
Query: 261 HFARDCKEEADRCYRCNGTG---HIARECAQSPD---------EPSCYNCNKTGHIARNC 404
H+ + ADR +RC G G H R C +S C C + GH +R C
Sbjct: 277 HYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Query: 405 --PEG------GRESA-------TQTCYNCNKSGHISRNCP 482
P G G S T C C K GH R CP
Sbjct: 337 RKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCP 377
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 246 VQPTGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 416
+ P+G A + +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 417 RESATQTCYNCNKSGHISRNCPD 485
RE A+ C C + H + CP+
Sbjct: 638 REEASSLCIRCFQLSHWAATCPN 660
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 381 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 497
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 231
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEG 413
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 285 EADRCYRCNGTGHIAREC 338
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 411 GGRESATQT--CYNCNKSGHISRNCPDG 488
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 231
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEG 413
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 285 EADRCYRCNGTGHIAREC 338
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 411 GGRESATQT--CYNCNKSGHISRNCPDG 488
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 231
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.54
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 411 GGRESATQTCYNCNKSGHISRNC 479
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.72
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 294 RCYRCNGTGHIAREC 338
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGG 416
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 455
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 456 SGHISRNCPDG 488
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.008
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGR 419
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGG 195
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 31.1 bits (67), Expect = 0.72
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 411 GGRESATQTCYNCNKSGHISRNCPDG 488
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 142 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 231
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 414 GRESATQTCYNCNKSGHISRNC 479
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 294 RCYRCNGTGHIAREC 338
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 482
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.077
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSG 216
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 494
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 470 PQLSRRHQDVLRVGKPGHISREC 538
P R D + GKPGH +REC
Sbjct: 111 PSGGRGGGDCFKCGKPGHFAREC 133
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 363 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 488
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +3
Query: 297 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 431
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 369 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 494
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 350 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 493
G +VV LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 234 EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 356
+V Q++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.54
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.72
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 354 EPSCYNCNKTGHIARNCPEGG 416
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 234 EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 356
+V Q++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.54
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.72
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 354 EPSCYNCNKTGHIARNCPEGG 416
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 416
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.23
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.31
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 354 EPSCYNCNKTGHIARNCPEGG 416
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 411 GGRESATQTCYNCNKSGHISRNCP 482
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 291 DRCYRCNGTGHIAREC 338
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 417 RESATQTCYNCNKSGHISRNCPD 485
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPE 410
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.54
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 405 PEGGRESATQTCYNCNKSGHISRNC 479
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.95
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 139 VCYKCNRTGHFAREC 183
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 363 CYNCNKTGHIARNC 404
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 297 CYRCNGTGHIAREC 338
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 458
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 416
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 479
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +3
Query: 435 TCYNCNKSGHISRNCPDGT---KTCYV 506
TCY+C + HI+ +CP T K+C++
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFI 170
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 420 ESATQTCYNCNKSGHISRNCP 482
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVS 204
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 476
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 354 EPSCYNCNKTGHIARNCPEGGRESATQ 434
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 0.95
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 435 TCYNCNKSGHISRNCPDGTKTCYV 506
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 350 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 493
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 350 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 493
G +VV Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +3
Query: 303 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 470
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 471 RNCP 482
CP
Sbjct: 327 MYCP 330
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.95
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 270 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 446
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 447 CNKS 458
C S
Sbjct: 181 CKSS 184
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 303 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 416
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 139 VCYKCNRTGHFARECTQGG 195
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 429 TQTCYNCNKSGHISRNCPD 485
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGG 416
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 112 SKPIAMSSSVCYKCNRTGHFAREC 183
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 291 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 464
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 465 ISRNC 479
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 139 VCYKCNRTGHFARECTQGG 195
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 324 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 476
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 419
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 494
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 419
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 494
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 429 TQTCYNCNKSGHISRNCPD-GTKTC 500
T+ C +C+ +GH SR CP G TC
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTC 26
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 279 KEEADRCYRCNGTGHIARECAQSP 350
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQG 192
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 384 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 482
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 482
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 482
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 279 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 458
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 459 GHIS 470
G ++
Sbjct: 128 GSLT 131
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 324 IARECAQSP-DEPSCYNCNKTGHIARNCP 407
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 6.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 142 CYKCNRTGHFAREC 183
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 279 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 434
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 435 TCYNCNKSGHISRNCP 482
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 279 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 434
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 435 TCYNCNKSGHISRNCP 482
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 452
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 453 KSGHISRNCP 482
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 438 CYNCNKSGHISRNCPDGTKT 497
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 2.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 363 CYNCNKTGHIARNCP 407
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFAREC 183
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 279 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 458
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 459 GHISRNCP 482
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 279 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 458
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 459 GHISRNCP 482
G + CP
Sbjct: 205 GKVM--CP 210
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 404
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 432 QTCYNCNKSGHISRNCPD 485
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 432 QTCYNCNKSGHISRNCP 482
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 432 QTCYNCNKSGHISRNCP 482
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 474 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 388
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = -3
Query: 486 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 343
R+D G G + C S S P S SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 369 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 476
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 369 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 476
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 369 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 476
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 100 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 210
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQS 347
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 5.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPE 410
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 438 CYNCNKSGHISRNCP 482
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 70 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 213
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 407
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 291 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 461
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 462 HISRNC 479
IS C
Sbjct: 275 EISTPC 280
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +3
Query: 306 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 407
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -3
Query: 507 TRSTSWCRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSC 376
T + C C RC CS S S T PP S+ C P C
Sbjct: 321 TVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 324 IARECAQSPDEPS-CYNCNKTGHIARNC 404
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 276 CKEEADRCYRCNGTGHIARECA 341
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,160,613
Number of Sequences: 28952
Number of extensions: 293725
Number of successful extensions: 1392
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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