Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060848.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.13 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.89 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.3  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 570 PSPKVSDTVVEPYNATLSVHQLVEKHRRNYCIDKRGLS 683
           PS +V  T ++ YN+ L +  L   H  NY    R L+
Sbjct: 654 PSERVHVTNMDQYNSILMIEHLSPDHNGNYSCVARNLA 691


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 397 VDSVLDVVRKEAESCDCLQG 456
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 127 LPELSSDLVAALTSLDMYDFPHFVLFM 47
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 453 GIPTDTLARRRHRFRYGHPLISKIREEYPDRIMN 554
           GIP+ TL +R HR     P      + + D  +N
Sbjct: 438 GIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLN 471


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 176 DSDLQLERINVYYNEASGGKYVPRAIPSTWSP 271
           D+ L+   I  Y N+  GG++V   I   W+P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTP 100


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 268  APSRRDGAGHVLAAGGFIVVY 206
            APSR+ G+GH    GG +  Y
Sbjct: 1922 APSRQTGSGHG-GHGGLLTPY 1941


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 188 QLERINVYYNEASGGKYVPRAIPSTWSPA 274
           QL+R ++ +N    G+  PR+  ++ SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,725
Number of Sequences: 438
Number of extensions: 3712
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)