Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060847.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.9  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   5.8  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   5.8  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   7.7  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   7.7  

>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 423 SLGSDLGKSATTLNFSSKATVASTSNKESGRL-LAVGCRCQLDTSS 557
           SL S+LGK+  T  + SKA V ++++ E  ++ +A   R   D  S
Sbjct: 473 SLSSNLGKTNPTSVYQSKANVTTSADVEKPQVKVATSSRVDYDLKS 518


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +2

Query: 449 SDNPQLFVEGYSRFDVQQGEWAIVGCWLPLP---T*HFIASYSSKSYPMIRVSMKIMRGV 619
           S + + F E YS+++  +     V  WLP P   +   I    S+    +  +  ++R +
Sbjct: 112 SQDVKRFEETYSQWNSGERSTEYVPVWLPGPEKGSETIINETRSQQSRWLAYAENVIRPL 171

Query: 620 FHFRFW 637
            H+++W
Sbjct: 172 IHYKYW 177


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 25/85 (29%), Positives = 38/85 (44%)
 Frame = -1

Query: 679  RSSMTTFQPKRP*LPETEMEDAPHNLHRNSDHRVRLGRITCDEVSSWQRQPTANNRPLSL 500
            +S +T  +PKRP L E  +     +L   S   +RL   + +  +S +  PTA N P S 
Sbjct: 778  QSLITPERPKRPSLNEKLL-----SLDGTS---IRLAGQSFNYENSAEDSPTATNTPTSQ 829

Query: 499  LDVEATVAFDEKLRVVADFPRSEPS 425
            +D        +  RV   F   +PS
Sbjct: 830  VDESNIFRSTDSPRVQPFFENKDPS 854


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 607 NLHRNSDHRVRLGRITCDE 551
           ++ RN+D R+++ ++ CDE
Sbjct: 221 SITRNTDERLKMAQVNCDE 239


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 607 NLHRNSDHRVRLGRITCDEVSSWQRQPTANNRPLSLLDVEATVAFDEKLRVVADFPR 437
           N H   +H  R+ R + +   +WQ+  T+    +SL   EA VA   ++  + + PR
Sbjct: 40  NEHAAKEHEERIRRPSVNR--AWQKNSTSGGPSVSLEKREADVASLGEVMDLEEVPR 94



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 586 HRVRLGRITCDEVSSW 539
           HRVR+  + C+  SSW
Sbjct: 181 HRVRMCELACERTSSW 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,931
Number of Sequences: 5004
Number of extensions: 58103
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)