Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060847.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    35   0.052
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776...    31   0.64 
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322...    29   4.5  
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72...    29   4.5  

>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
 Frame = +2

Query: 323  IRSRCLAEG-RLFEDPEFPAVDRSLY---YKESLDRPIT--WLRPGE------ISDNPQL 466
            +R   +A+G R F D EFP  DRSL+      SL   +   W+RP +      IS  P L
Sbjct: 1627 VREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEWMRPSDIAKEVSISSQPCL 1686

Query: 467  FVEGYSRFDVQQGEWAIVGCW 529
            F    +  DV QG   +  CW
Sbjct: 1687 FSGSVNSSDVCQGR--LGDCW 1705



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 508  VGDCWLLAAVANLTLHRKLFFQVVPDDQSFDEDYAGRLPFPFLAVTGAWV 657
            +GDCW L+AVA LT   ++   ++  + + +  Y  R       + G WV
Sbjct: 1701 LGDCWFLSAVAVLTEMARISEVIITPEYNEEGIYTVR-----FCIQGEWV 1745


>01_05_0699 -
           24376987-24377154,24377259-24377406,24377530-24377645,
           24377743-24377925,24377998-24378186,24378273-24378497,
           24378514-24378759,24378836-24378983,24379126-24379241,
           24379441-24379497,24379735-24379923,24380001-24380150,
           24380323-24380404,24380484-24380601,24380713-24380899,
           24381044-24381138,24381223-24381277,24381376-24381567,
           24381657-24381853,24382534-24382684
          Length = 1003

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = +2

Query: 245 QYQDYKVLXETRPSSFGPATYQDFKDIRSRCLAEGRLFEDPE---FPAVDRSLYYKESLD 415
           QY+    L    P S  P +   F D R+ C   G L        F  +DR+L  K    
Sbjct: 57  QYEKIASLFRICPESILPPSANSFGD-RNNCPVPGTLLNTNNMRGFQNLDRALLLKAEAK 115

Query: 416 RPITWLRPGEISDNPQLFV 472
           + +  ++ G++ +NP L +
Sbjct: 116 KILHDIKSGKVEENPALLL 134


>09_03_0096 +
           12328116-12329561,12329810-12329852,12332119-12332237,
           12333326-12333853
          Length = 711

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -3

Query: 533 AANSQ-QSPTLLVGRRSDCSLRRKVEGCR*FPQV*AK*WACPGSPCSRGCGPRPETRGLR 357
           A+N Q Q+PT    RR DC + ++ E C    Q       C       GC  R E +G+ 
Sbjct: 638 ASNKQSQAPTQKTSRRRDCVICKREEACVILLQ-------CAHQVLCVGCNKRHEEKGVA 690

Query: 356 R 354
           R
Sbjct: 691 R 691


>02_01_0099 +
           726576-727105,727899-728048,728510-728635,728726-729714,
           729776-729818,730101-730218,730743-730853
          Length = 688

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = -1

Query: 526 TANNRPLSLLDVEATVAFDEKLRVVADFPRSEPSDGPVQALLVVEAAVHGRKLGVFEEST 347
           + ++ P   ++ EA V  + ++    +  RS     P     VVEAA HG++     +S 
Sbjct: 90  SGDSSPAVRVEEEAEVEAEAEVGTAVEPQRSGTLASPTD---VVEAAQHGQRQQQASQSQ 146

Query: 346 FS*APRSYVFEVLIRSRTE 290
            + +PRSY   V+ +   E
Sbjct: 147 QTPSPRSYAAAVVNKREDE 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,920,303
Number of Sequences: 37544
Number of extensions: 440897
Number of successful extensions: 1157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)