Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060847.seq
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 70 2e-12
SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 55 5e-08
SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09) 35 0.053
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17) 32 0.38
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8) 29 4.6
SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0) 29 4.6
SB_52303| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88) 28 8.1
>SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 842
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +2
Query: 320 DIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFDVQ 499
D+R + + G+ FED EF A+D S+++ + RP W RP +I ++P +FV G SR D+Q
Sbjct: 198 DVRRQVRSTGKPFEDDEFLAIDSSIFFSKRPPRPFEWKRPSDICEDPHMFVGGASRLDIQ 257
Query: 500 QGEWAIVGCWL 532
QG + CWL
Sbjct: 258 QG--MLGDCWL 266
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 508 VGDCWLLAAVANLTLHRKLFFQVVPDD---QSFDEDYAGRLPF 627
+GDCWLLAA+A LT H L +VVP D D +Y G L F
Sbjct: 261 LGDCWLLAAIAALTQHSALMNKVVPQDYVANPNDRNYTGALKF 303
>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 1133
Score = 55.2 bits (127), Expect = 5e-08
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = +2
Query: 314 FKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLDRPITWLRPGEISDNPQLFVEGYSRFD 493
F ++ + L RLFED +FPA +R L+ + + I W RP EIS +PQ G+S D
Sbjct: 12 FASLQRQLLNSKRLFEDRDFPASNRVLFTRRRSVQLI-WKRPHEISKSPQFIARGFSSSD 70
Query: 494 VQQGEWAIVGCWLPLPT*HFIASYSSKSY---PMIRVSMKIMRGVFHFRFWQ 640
V QG I CW + + P G+F F FWQ
Sbjct: 71 VAQGR--IRNCWFVAALADLTTNIDLLHHVCPPDQSFEPGSYCGMFRFNFWQ 120
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 508 VGDCWLLAAVANLTLHRKLFFQVVPDDQSFDE-DYAGRLPFPFLAVTGAWV 657
+ +CW +AA+A+LT + L V P DQSF+ Y G F F G WV
Sbjct: 76 IRNCWFVAALADLTTNIDLLHHVCPPDQSFEPGSYCGMFRFNFWQF-GEWV 125
>SB_53237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 308 QDFKDIRSRCLAEGRLFEDPEFPAVDRSLYYKESLD-RPITWLRPGEISDN--PQLFVEG 478
Q + +++ C +LF D F SLYY S P+ W RP EI P LFV+G
Sbjct: 10 QRYSKLKAECEKNEQLFVDSVFKPETSSLYYSRSCPPEPVEWKRPSEICHPAVPHLFVDG 69
Query: 479 YSRFDVQQGEWAIVGCW 529
DV QG+ + CW
Sbjct: 70 ADSHDVTQGK--LGNCW 84
Score = 34.3 bits (75), Expect = 0.093
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +1
Query: 508 VGDCWLLAAVANLTLHRKLFFQVVP--DDQSFD----EDYAGRLPFPFLAVTGAW 654
+G+CW +AA ++L L L ++V+P D Q +D E+Y G F F G W
Sbjct: 80 LGNCWFVAACSSLALRPFLLYKVIPDKDKQEWDPKKPENYQGIFRFRFYR-QGEW 133
>SB_31653| Best HMM Match : Peptidase_C2 (HMM E-Value=4.5e-09)
Length = 208
Score = 35.1 bits (77), Expect = 0.053
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 508 VGDCWLLAAVANLTLHRKLFFQVVPDD----QSFDEDYAGRLPFPFLAVTGAWV 657
+G+CWLLAA++ L H+ L +++P+ F Y G++ F L G WV
Sbjct: 119 LGNCWLLAAMSVLAQHKPLVDRIMPEGVYEADRFSPRYTGKVVFK-LWQYGEWV 171
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 443 EISDNPQLFVEGYSRFDVQQGEWAIVGCWL 532
EI P+ +V+G SR D++QG + CWL
Sbjct: 97 EICSEPRFYVDGASRLDIKQG--VLGNCWL 124
>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
Length = 1426
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 634 ETEMEDAPHNLHRNSDHRVRLGRITCDEVSSWQRQPTANNRPLSLLDVEATVAFDE 467
E +ED L + ++R DEV++W +Q A RP LL + A+D+
Sbjct: 935 EDRIEDTVRKLEIQQEDKLRKWDEGLDEVNTWVQQTKAKIRPEPLLARDVDAAYDQ 990
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 449 SDNPQLFVEGYSRFDVQQGEWAIVGC 526
+D P+LF + SR+ V++GE ++GC
Sbjct: 4226 ADKPRLFNQTISRWTVEEGEHVVLGC 4251
>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
Length = 551
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 649 RP*LPETEMEDAPHNLHRNSDHRVRLGRITCD 554
RP L T+ E PH +HR+ L RI C+
Sbjct: 146 RPHLAITQCEHRPHLPRTPCEHRLHLARIPCE 177
>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
Length = 1128
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 634 ETEMEDAPHNLHRNSDHRVRLGRITCDEVSSW 539
ET +ED + L + DHR RL + +S W
Sbjct: 294 ETRIEDLQNVLSQTKDHRYRLLGTVANNISQW 325
>SB_52303| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 508 VGDCWLLAAVANLTLHRKLFFQVVPDDQSFDEDYA 612
+G C LL + L LFF+ P ++ ++DYA
Sbjct: 12 IGSCCLLLLILYQCLKAGLFFKTEPPERPNEKDYA 46
>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
Length = 669
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 118 CIRAPKFPPPFWPAIASSRTFT 53
C RAPK PPP A+A R T
Sbjct: 482 CARAPKMPPPERQALARLRAHT 503
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,844,614
Number of Sequences: 59808
Number of extensions: 482106
Number of successful extensions: 1033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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