Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060846.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   134   8e-33
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   134   1e-32
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    28   1.4  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.4  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  134 bits (325), Expect = 8e-33
 Identities = 68/143 (47%), Positives = 81/143 (56%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH     
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQ 117

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLXRFPSFPWL*PTKSKRSTRPNRLSSS*GASRHG 614
                                ARG  +   P  P +     +   +     +     +  
Sbjct: 118 NEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAY 177

Query: 615 LIILKVYKSQRLRAGKGKMRNRR 683
             ++KV  S++LRAGKGK+RNRR
Sbjct: 178 RDVIKVANSRKLRAGKGKLRNRR 200



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/58 (53%), Positives = 41/58 (70%)
 Frame = +1

Query: 82  LSVARPLVSVYSEKSXTVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           ++ ARP VS+Y+ K  +V      LPFVF APIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  134 bits (324), Expect = 1e-32
 Identities = 68/143 (47%), Positives = 81/143 (56%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH     
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQ 117

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLXRFPSFPWL*PTKSKRSTRPNRLSSS*GASRHG 614
                                ARG  +   P  P +     +   +     +     +  
Sbjct: 118 NEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAY 177

Query: 615 LIILKVYKSQRLRAGKGKMRNRR 683
             ++KV  S++LRAGKGK+RNRR
Sbjct: 178 RDVVKVANSRKLRAGKGKLRNRR 200



 Score = 68.5 bits (160), Expect = 8e-13
 Identities = 32/58 (55%), Positives = 41/58 (70%)
 Frame = +1

Query: 82  LSVARPLVSVYSEKSXTVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           ++ ARP VS+YS K  +V      LPFVF APIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 548 DKVQEINKTKQAVIFLRRLKAWSDYP*GVQVSASSCW 658
           D V+   K KQ   FL  + +W D P    +    CW
Sbjct: 81  DAVKSTIKCKQCQSFLTSISSWKDLPSANWMEMLDCW 117


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 143 APCTVSLFSEYTDTKGRATDRLISLL 66
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 100 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 23
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,669
Number of Sequences: 5004
Number of extensions: 46050
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)