Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060846.seq
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 132 2e-31
07_01_0578 + 4295386-4296489,4297394-4297507 129 2e-30
10_02_0199 + 6668902-6669293,6669825-6669882 35 0.052
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 30 1.5
11_01_0748 + 6299776-6300042 30 2.0
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.0
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 2.6
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 3.4
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 29 4.5
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.5
03_06_0170 - 32128619-32129647 28 6.0
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 7.9
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 28 7.9
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 28 7.9
05_05_0015 + 21530547-21531047 28 7.9
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 132 bits (319), Expect = 2e-31
Identities = 72/146 (49%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 61 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNI 120
Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLXRFPSFPWL*P---TKSKRSTRPNRLSSS*GAS 605
ARG + P FP + +++ + ++ GA
Sbjct: 121 RLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAY 180
Query: 606 RHGLIILKVYKSQRLRAGKGKMRNRR 683
K S +RAGKGKMRNRR
Sbjct: 181 ADA---EKTKDSVAIRAGKGKMRNRR 203
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 SVARPLVSVYS-EKSXTVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
+ ARPLVSV + E A +P V APIRPD+V H +S N RQPY VS+
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +2
Query: 512 IXKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 619
I +PE PLVV+D ++ I KT Q++ L+++ A++D
Sbjct: 147 IEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 129 bits (312), Expect = 2e-30
Identities = 69/146 (47%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Frame = +3
Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 62 AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNV 121
Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLXRFPSFPWL*PTKS---KRSTRPNRLSSS*GAS 605
ARG + P P + + +++++ ++ GA
Sbjct: 122 HLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAY 181
Query: 606 RHGLIILKVYKSQRLRAGKGKMRNRR 683
K S +R GKGKMRNRR
Sbjct: 182 ADA---EKAKDSVGIRPGKGKMRNRR 204
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +1
Query: 94 RPLVSVYSEKSX--TVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
RPLVSV + + T ++ L VF AP+RPD+V VH +S N RQPY VS+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 35.1 bits (77), Expect = 0.052
Identities = 21/47 (44%), Positives = 23/47 (48%)
Frame = +3
Query: 243 REQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 383
RE G G A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGG----AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +3
Query: 135 AGCSQAPPVRVQXAHPSGPGQ*CSRFYVQELEAALLREQGAGHQTSAESWGTGRAVARIP 314
+G ++A + + P GP ++ +++L A RE A + +A + T +A +
Sbjct: 448 SGYTRAATLNLPSVIPIGPRN--TQENIKQLLAGGQRELVATGEAAATAAATAKATPPLA 505
Query: 315 R-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 413
R GG HR G+G G GG WRR
Sbjct: 506 RRTADGGAHR-GRGGGGAEADGGARRGRGGGWRR 538
>11_01_0748 + 6299776-6300042
Length = 88
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 225 LEAALL--REQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 380
LEA L+ R G G + E+ G GRAVA + R H +G GA GG
Sbjct: 16 LEAVLVDRRMAGGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGAGAVEAGGG 69
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 271
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 342 TYEYHH-HGHAEFGRQHVQYPMIQHWFGDQLLAHAVGLPRVLGH 214
T+++HH HGH FGR H +P H G ++ + G P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAGG-MVNYGGGAPYYAAH 184
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +3
Query: 219 QELEAALLREQGAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 383
+++ A ++G G S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 384 MFAPTKP-WR 410
M P P WR
Sbjct: 123 MLRPGFPKWR 132
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 199 DVHVSMSKNSRQPYCVSKELVTKPVLNHGVL 291
DVH+ +++NSR Y ++K+LV HGVL
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGVL 827
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 258 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 362
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_06_0170 - 32128619-32129647
Length = 342
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 526 RASLGCSRQSPRDQQDQTGCHLPEAPQGMV*LSLRCT 636
R S Q+P+D QD+ HLP P+G LS RC+
Sbjct: 62 RLSTATFLQNPQDSQDKI--HLPHLPEG---LSTRCS 93
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 399 SWGRTYVHHDTCYRRHPDRTYEYHH 325
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 27.9 bits (59), Expect = 7.9
Identities = 27/88 (30%), Positives = 35/88 (39%)
Frame = +3
Query: 150 APPVRVQXAHPSGPGQ*CSRFYVQELEAALLREQGAGHQTSAESWGTGRAVARIPRVRGG 329
APPV V A+ G + +E E + E+G G G GR R RGG
Sbjct: 8 APPVLVGWAYGRGGVEETETETEEEEEWGVEMERGRGR-------GRGRGRGRGRGRRGG 60
Query: 330 GTHRSGQGAFGNMCRGGRMFAPTKPWRR 413
G+G RG AP+ P +R
Sbjct: 61 AVRGRGRGRGRCRGRGRSRAAPSPPAKR 88
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 57 ASLK*RNESIGSPTFSVGVFREE*XGAGCSQAPPVRVQXAHPSGPGQ*CSRF 212
ASL N + P+F V G SQA V + AH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>05_05_0015 + 21530547-21531047
Length = 166
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Frame = +3
Query: 204 SRFYVQELEAALLREQGAGHQTSAESWGTGRAVARIPR--VRGGGTHRSGQGAFGNMCRG 377
+RF L+ AL A +TS W GR R+PR V G G G + RG
Sbjct: 76 TRFEYGILKMALRMAVAAAPKTSHRRWRQGRWRRRLPRHPVADGIEDSDGGGGSRALLRG 135
Query: 378 GRMFAPTKPWR-RW 416
R + WR RW
Sbjct: 136 WRR---GRLWRQRW 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,584,147
Number of Sequences: 37544
Number of extensions: 406020
Number of successful extensions: 1465
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -