Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060846.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   127   8e-30
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   127   8e-30
At1g76010.1 68414.m08825 expressed protein                             30   1.2  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   2.9  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   2.9  
At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to S...    29   2.9  
At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to S...    29   2.9  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    29   3.8  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    29   3.8  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    28   5.0  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   6.6  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    27   8.8  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  127 bits (306), Expect = 8e-30
 Identities = 69/146 (47%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH     
Sbjct: 64  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNV 123

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLXRFPSFPWL*PTKS---KRSTRPNRLSSS*GAS 605
                                ARG  +   P  P +    +   ++++   ++    GA 
Sbjct: 124 NMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAY 183

Query: 606 RHGLIILKVYKSQRLRAGKGKMRNRR 683
                  K   S  +R GKGKMRNRR
Sbjct: 184 DDA---EKAKNSIGIRPGKGKMRNRR 206



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = +1

Query: 85  SVARPLVSVYSEKSX--TVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVSKE 255
           + ARPLV+V        T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  127 bits (306), Expect = 8e-30
 Identities = 69/146 (47%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH     
Sbjct: 63  AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNV 122

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLXRFPSFPWL*PTKS---KRSTRPNRLSSS*GAS 605
                                ARG  +   P  P +    +   ++++   ++    GA 
Sbjct: 123 NMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAY 182

Query: 606 RHGLIILKVYKSQRLRAGKGKMRNRR 683
                  K   S  +R GKGKMRNRR
Sbjct: 183 DDA---EKAKNSIGIRPGKGKMRNRR 205



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSX--TVQGAAKPLPFVFXAPIRPDLVNDVHVSMSKNSRQPYCVS 249
           M+ + ARPLV++ +      T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 250 KE 255
           K+
Sbjct: 61  KK 62


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 377
           QG G     +  G GR   R  R RGGG  R G G F N   G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 390 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 271
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 390 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 271
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At1g48410.2 68414.m05409 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1050

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 383
           +G+G + +    G GR   R    +GGG H+ G+G      +GGR
Sbjct: 15  EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59


>At1g48410.1 68414.m05408 argonaute protein (AGO1) identical to
           SP|O04379 Argonaute protein (AGO1) {Arabidopsis
           thaliana}; contains Pfam profiles PF02171: Piwi domain,
           PF02170: PAZ domain
          Length = 1048

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 249 QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 383
           +G+G + +    G GR   R    +GGG H+ G+G      +GGR
Sbjct: 15  EGSGSREAGPVSGGGRGSQRGGFQQGGGQHQGGRGYTPQPQQGGR 59


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 374 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCC 472
           WW +V     LA+ APS   P  +  L  SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 374 WWTYVRPHEALAALAPSRQPPTAESGLGGSRCC 472
           WW +V     LA+ APS   P  +  L  SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 225 LEAALLREQGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 395
           +  AL+R +  G + +AE   + + + ++P   G G    G+   G FGN   GG  F  
Sbjct: 76  MAVALIRRR-MGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134

Query: 396 TKPW 407
              W
Sbjct: 135 ISKW 138


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEF 307
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 295
           HHD  +  H D  +++ HH H      H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,814,817
Number of Sequences: 28952
Number of extensions: 274136
Number of successful extensions: 868
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)