Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060845.seq
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1; ...    37   0.40 
UniRef50_Q4FKW6 Cluster: Rod shape-determining protein rodA; n=2...    34   3.7  
UniRef50_Q7RL21 Cluster: Putative uncharacterized protein PY0272...    33   4.9  
UniRef50_UPI0000F32779 Cluster: UPI0000F32779 related cluster; n...    33   8.6  

>UniRef50_Q4YAY8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 894

 Score = 37.1 bits (82), Expect = 0.40
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 230 LLLNIYYYQHPNFTIKKKYKRYNLDRNHFNYNQQCKLTKVNKM 102
           LL NIYY+   N  IKKK K  N+  N+ + +  CK  KV  +
Sbjct: 580 LLYNIYYFYKKNGKIKKKEKDNNIGGNNSSSSSSCKRYKVKNL 622


>UniRef50_Q4FKW6 Cluster: Rod shape-determining protein rodA; n=2;
           Candidatus Pelagibacter ubique|Rep: Rod
           shape-determining protein rodA - Pelagibacter ubique
          Length = 373

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = -1

Query: 589 AAFYFVXVIFMWCWKRIFGISWT-ELRTISPFFKNLTLSSVFQ---RLCMGAYYHFLDIS 422
           A F+++ V+F   W  ++GI  +   R I+ +F NL  S + +    +C+  YYH + ++
Sbjct: 79  AYFFYIVVLFFLVWASLYGIKASGSQRWINLYFINLQPSELMKIAIIVCLAKYYHRIQLN 138


>UniRef50_Q7RL21 Cluster: Putative uncharacterized protein PY02726;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY02726 - Plasmodium yoelii
           yoelii
          Length = 678

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 215 YYYQHPNFTIKKKYKRYNLDRNHFNYNQQCKLTKVN 108
           Y +   +F I K+  +YN+D+N+ N N  C L K+N
Sbjct: 367 YTFDDVSF-IDKEILKYNMDKNNLNINDICNLIKIN 401


>UniRef50_UPI0000F32779 Cluster: UPI0000F32779 related cluster; n=9;
           Bos taurus|Rep: UPI0000F32779 UniRef100 entry - Bos
           Taurus
          Length = 263

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 559 MWCWKRIFGISWTELRTISPFFKNLT 482
           +WCW+R+  + WTE R+     K ++
Sbjct: 146 LWCWRRLLRVPWTERRSNQSILKEIS 171


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,505,632
Number of Sequences: 1657284
Number of extensions: 10604900
Number of successful extensions: 23917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23909
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)