Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060845.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   9.4  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 475 CLMSSS*RMEIWCEVRSMKYQR 540
           CL  S  +++IW + R +KY++
Sbjct: 153 CLRLSEKQVKIWFQNRRVKYKK 174


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 179 KYKRYNLDRNHFNYNQQCK 123
           K K  NL++++ N+N+Q +
Sbjct: 314 KTKETNLEKSNLNHNEQLR 332


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 179 KYKRYNLDRNHFNYNQQCK 123
           K K  NL++++ N+N+Q +
Sbjct: 206 KTKETNLEKSNLNHNEQLR 224


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 12  RTDVHIVAQSLYFIIQSYYCQSLVVVKI 95
           R ++HI    ++F   S YC +  V+ +
Sbjct: 58  RNEIHIKIVLMFFKEASLYCFNYYVIVV 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,404
Number of Sequences: 336
Number of extensions: 3105
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)