Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060845.seq
         (685 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U prot...    29   7.8  

>AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U protein
           protein.
          Length = 1910

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +3

Query: 324 HLSYHCCQSGCGRHSLLWADVIKALYEVISSPGDMSKK**YAPMHKR*KTLLNVKFLK-- 497
           +L  H CQ      S LW  +I  ++EV+    ++  K  Y  + +  + L+ ++FL+  
Sbjct: 99  YLKDHWCQFDASMVSFLWISIILQIFEVL----EIVPKFSYLSIMRAPRPLIMIRFLRVF 154

Query: 498 -NGDMVRSSVHEIPKIRFQHHMKIT 569
               M +S +++I K   Q    +T
Sbjct: 155 LKFSMPKSRINQIFKRSSQQIYNVT 179


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,370,079
Number of Sequences: 53049
Number of extensions: 511266
Number of successful extensions: 1000
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)