Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060845.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    30   1.3  
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine re...    28   7.1  

>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 577 FVXVIFMWCWKRIFGISWTELRTISPFFKNLTLSSVFQRLCMGAYYHFLDISPG 416
           F  V +   +K +F   WT+L     F  + T+ ++F ++    YY F D+S G
Sbjct: 102 FFAVFYPILYKNVFSSKWTKLVIFISFIFSTTVLTIFFQIYPCRYY-FSDVSLG 154


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 584 FLFCLXNLHVVLETNLWYFMDRTSHHIS 501
           F+FCL +L+V++    WY  D    H++
Sbjct: 380 FMFCLASLYVMMTLTSWYHPDSDLAHLN 407


>AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical
           protein T21D12.9c protein.
          Length = 737

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 599 YVTCSFLFCLXNLHVV-LETNLWYFMDRTSHHISILQELDIKQRLSALVHGRILSFFGHI 423
           ++   F + L NL ++ +  N    + R SH +  L++LD++  L + V    LS+   +
Sbjct: 90  HIDFEFFYNLPNLKILNIRKNRLARIPRGSHELGHLEKLDLRSNLISTVTSEELSYLAAV 149


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 599 YVTCSFLFCLXNLHVV-LETNLWYFMDRTSHHISILQELDIKQRLSALVHGRILSFFGHI 423
           ++   F + L NL ++ +  N    + R SH +  L++LD++  L + V    LS+   +
Sbjct: 90  HIDFEFFYNLPNLKILNIRKNRLARIPRGSHELGHLEKLDLRSNLISTVTSEELSYLAAV 149


>AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine
           receptor, class x protein26 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 629 TFCWLWHIGFYVTCSFLFCLXNLHVVLETNLWYF 528
           TF WL  I   + C+ ++ + N H+  ++NLW F
Sbjct: 125 TFVWLVSI---IGCTAIYEVANCHLEYDSNLWNF 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,123,290
Number of Sequences: 27780
Number of extensions: 267480
Number of successful extensions: 603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)