Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060845.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.67 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.7  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -3

Query: 203 HPNFTIKKKYKRYNLDRNHFN--YNQQCK 123
           H N   K  Y   N + N++N  YN  CK
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCK 352


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 200 PNFTIKKKYKRYNLDRNHFNYNQQCKLTKVN 108
           P  T  + Y RY  + ++ NYN + K T ++
Sbjct: 168 PRATDSRHYDRYKEEESNENYNWEHKETHID 198


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 488 LDIKQRLSALVHGRILSFFGHISR 417
           +D+K  L  LV G I+    HI R
Sbjct: 310 MDLKGDLEGLVEGVIIDCSNHIGR 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,533
Number of Sequences: 438
Number of extensions: 3545
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)