Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060845.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61360.1 68418.m07699 expressed protein                             29   3.8  
At4g16650.1 68417.m02516 expressed protein contains Pfam PF03138...    28   6.6  
At2g27160.1 68415.m03264 hypothetical protein                          28   6.6  
At5g54020.1 68418.m06719 expressed protein                             27   8.8  
At4g00350.1 68417.m00046 MATE efflux family protein similar to r...    27   8.8  

>At5g61360.1 68418.m07699 expressed protein 
          Length = 210

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 586 AFYFVXVIFMWCWKR 542
           +FY V VIF+W WKR
Sbjct: 147 SFYSVMVIFLWWWKR 161


>At4g16650.1 68417.m02516 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator like protein'  based on similarity to
           axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 549

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = -3

Query: 650 FVPXP*STFCWLWHIGFYVTCSFLFCLXNLHVVLETNLWYFMDRTSHHISILQELDIKQR 471
           F   P  T  W W  GF +    +  L   HVV     WY     S  +S    LD+ +R
Sbjct: 36  FSAQPKRTVMWTWVCGFMLFSLGVISLFTGHVVSHLE-WY-----SQQLSKRSLLDMSRR 89

Query: 470 LSALV-HGRILSFFGHISRRGNDFI 399
               V   +   FF   S RG +F+
Sbjct: 90  EPIDVWKSKYSKFFYGCSERGRNFL 114


>At2g27160.1 68415.m03264 hypothetical protein
          Length = 133

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 47  FYYSKLLLSKFSCCQDLVAF 106
           F+ S  LL  FSCC DLV F
Sbjct: 29  FFLSSKLLLAFSCCFDLVQF 48


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 412 PRREICPKNDSMRP-CTSAERRC 477
           P  EICP N++ RP C+  + RC
Sbjct: 511 PDVEICPNNEATRPLCSGCKVRC 533


>At4g00350.1 68417.m00046 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554
           Uncharacterized membrane protein family
          Length = 542

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 604 VSMLPAAFYFVXVIFMWCWKRIFGISWTELRTISPFFKNLTLSSVFQRLCMGAYY 440
           VS    A   V  +  WC     G+SW   + + PF K    S+V   LC+  +Y
Sbjct: 276 VSAWGIAIAQVVYVVGWCKDGWKGLSWLAFQDVWPFLKLSFASAVM--LCLEIWY 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,137,692
Number of Sequences: 28952
Number of extensions: 242561
Number of successful extensions: 493
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)