Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060843.seq
(662 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 186 6e-46
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 107 2e-22
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 104 2e-21
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 102 7e-21
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 101 1e-20
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 101 2e-20
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 101 2e-20
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 100 4e-20
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 96 8e-19
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 95 2e-18
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 94 2e-18
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 79 7e-14
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 72 1e-11
UniRef50_Q65979 Cluster: Brazilian strain defective RNA, complet... 54 3e-06
UniRef50_Q3MLL0 Cluster: Putative movement protein; n=1; Nemesia... 51 2e-05
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 50 5e-05
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 48 3e-04
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 47 4e-04
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 47 5e-04
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 45 0.002
UniRef50_O91259 Cluster: Overlapping protein; n=1; Physalis mott... 44 0.002
UniRef50_A5JPL2 Cluster: Putative movement protein; n=1; Okra mo... 44 0.002
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 44 0.002
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 43 0.006
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 42 0.010
UniRef50_Q66339 Cluster: Non-structural/coat protein fusion prod... 42 0.018
UniRef50_P20129 Cluster: 70 kDa protein; n=1; Eggplant mosaic vi... 40 0.040
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 40 0.053
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 39 0.093
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 39 0.093
UniRef50_Q3BD97 Cluster: Putative movement protein; n=1; Plantag... 39 0.12
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 39 0.12
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 39 0.12
UniRef50_P79950 Cluster: Tyrosine kinase receptor; n=3; Xenopus|... 38 0.16
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 38 0.16
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 37 0.38
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 37 0.38
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 37 0.38
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 36 0.66
UniRef50_Q4Q2P2 Cluster: Protein kinase, putative; n=3; Leishman... 36 0.66
UniRef50_Q32WC8 Cluster: Overlapping protein p62; n=1; Dulcamara... 35 1.5
UniRef50_Q22WD6 Cluster: Putative uncharacterized protein; n=1; ... 33 4.6
UniRef50_Q5BE57 Cluster: Putative uncharacterized protein; n=1; ... 33 4.6
UniRef50_A6R238 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 4.6
UniRef50_Q5CHK1 Cluster: Asparagine-rich protein; n=2; Cryptospo... 33 6.1
UniRef50_Q8CDV4 Cluster: Adult male testis cDNA, RIKEN full-leng... 33 8.1
UniRef50_A6PS51 Cluster: Putative uncharacterized protein precur... 33 8.1
UniRef50_A6EW18 Cluster: Putative uncharacterized protein; n=1; ... 33 8.1
UniRef50_Q9VCM2 Cluster: CG4374-PA; n=1; Drosophila melanogaster... 33 8.1
UniRef50_Q0UAC5 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 8.1
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 186 bits (452), Expect = 6e-46
Identities = 86/90 (95%), Positives = 87/90 (96%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 AIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNP 436
AIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNP
Sbjct: 72 AIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNP 131
Query: 437 HPVETEVAFMHDALMFITPSQILG-FSRTP 523
HPVETEVAFMHDALMFITPSQILG F +P
Sbjct: 132 HPVETEVAFMHDALMFITPSQILGLFKDSP 161
Score = 147 bits (357), Expect = 2e-34
Identities = 68/69 (98%), Positives = 69/69 (100%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT
Sbjct: 3 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 62
Query: 231 SPHPHAAHR 257
SPHPHAAH+
Sbjct: 63 SPHPHAAHK 71
Score = 70.9 bits (166), Expect = 2e-11
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYS 609
LFKDSPSMTSLY SLIVPAEAAYGVPSLFPDLYS
Sbjct: 156 LFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYS 189
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 107 bits (258), Expect = 2e-22
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
+ET LLF HW+ LAR+PSTVM+MKP KFQKL LNP F LINFR T D TRYP ++
Sbjct: 73 VETFLLFNHWHALARLPSTVMFMKPSKFQKLAALNPKFQELINFRLTAADTTRYPSTSLT 132
Query: 440 PVETEVAFMHDALMFITPSQILG-FSRTP 523
+ FMHDALM+ +P+QI+ F+++P
Sbjct: 133 FPSNSICFMHDALMYFSPAQIVDLFTQSP 161
Score = 57.2 bits (132), Expect = 3e-07
Identities = 24/69 (34%), Positives = 39/69 (56%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
F + ++ L +T HRDA T P++ + + R L LYP+ + + +P L GI + G
Sbjct: 3 FQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPWLLPKEAVPHLLSWGIPNSGLGV 62
Query: 231 SPHPHAAHR 257
+PHPH H+
Sbjct: 63 TPHPHPIHK 71
Score = 39.1 bits (87), Expect = 0.093
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYS 609
LF SP++ +LY SLIVP E+ + SLFP++Y+
Sbjct: 156 LFTQSPALETLYCSLIVPPESHFTDLSLFPEIYT 189
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 104 bits (250), Expect = 2e-21
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
IETHLL + W + AR PS VM++KPEKF KLQ PNFA LIN+R PKD TRYP ++ +
Sbjct: 80 IETHLLLDVWPNYARGPSDVMFIKPEKFAKLQSRQPNFAHLINYRLVPKDTTRYPSTSTN 139
Query: 440 PVETEVAFMHDALMFITPSQI 502
+ E FMHDALM+ TP QI
Sbjct: 140 LPDCETVFMHDALMYYTPGQI 160
Score = 59.7 bits (138), Expect = 6e-08
Identities = 23/65 (35%), Positives = 39/65 (60%)
Frame = +3
Query: 63 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHP 242
V++L T HRD ITAP+VE+ + R L+ YP+ + + L+ G+ ++ +G + HP
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVDISGFGHAAHP 73
Query: 243 HAAHR 257
H H+
Sbjct: 74 HPVHK 78
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 102 bits (245), Expect = 7e-21
Identities = 47/82 (57%), Positives = 62/82 (75%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
IETHLL + W H A+VPS+V++MKP KF KLQ+ N NF++L N+R T KD RYP ++
Sbjct: 94 IETHLLHKVWPHYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTPRYPNTSTS 153
Query: 440 PVETEVAFMHDALMFITPSQIL 505
+TE AFMHDALM+ TP+QI+
Sbjct: 154 LPDTETAFMHDALMYYTPAQIV 175
Score = 68.5 bits (160), Expect = 1e-10
Identities = 28/67 (41%), Positives = 44/67 (65%)
Frame = +3
Query: 57 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSP 236
++++TL++TIHRD I APL+ET S +R L+ +P+ V + +P L + GI V +G
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKA 85
Query: 237 HPHAAHR 257
HPH H+
Sbjct: 86 HPHPVHK 92
Score = 36.3 bits (80), Expect = 0.66
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLY 606
LF P + LY SL+VP E+++ SL PDLY
Sbjct: 177 LFLSCPKLEKLYASLVVPPESSFTSISLHPDLY 209
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 101 bits (243), Expect = 1e-20
Identities = 45/82 (54%), Positives = 56/82 (68%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
+ETHLLF HW HL PS+V++MKP+KF KLQ+ N F L N+R TP D R+P ++PH
Sbjct: 73 LETHLLFTHWMHLCTQPSSVLFMKPQKFMKLQRKNKFFQHLHNYRLTPTDSVRFPSTSPH 132
Query: 440 PVETEVAFMHDALMFITPSQIL 505
T FMHDALM+ P QIL
Sbjct: 133 LPNTPFVFMHDALMYYQPEQIL 154
Score = 62.9 bits (146), Expect = 7e-09
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
F +D LA+T H+D P++E+ + LQ YP+ V L P L + GI + S+G+
Sbjct: 3 FQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDLQPFLLKSGIPINSFGS 62
Query: 231 SPHPHAAHR 257
SPHPH AH+
Sbjct: 63 SPHPHPAHK 71
Score = 35.5 bits (78), Expect = 1.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 484 HYPFPNFRLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYS 609
+ P LF P +T+L+ SL+ P E+ + SL PDLY+
Sbjct: 148 YQPEQILHLFHQVPQLTNLFCSLVTPPESHFTHLSLMPDLYT 189
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 101 bits (241), Expect = 2e-20
Identities = 48/89 (53%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
IETHLLF+HW+H R STV++MKPEKFQKL NP+F L+N+R KD TR+P +
Sbjct: 73 IETHLLFQHWSHNCREDSTVLFMKPEKFQKLASFNPHFKHLLNYRLHAKDTTRFPETACS 132
Query: 440 PVETEVAFMHDALMFITPSQILG-FSRTP 523
T FMHDAL + PSQI+ F R P
Sbjct: 133 LPTTSTVFMHDALTYYKPSQIMDLFLRIP 161
Score = 66.1 bits (154), Expect = 7e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
F + + L++T+HRD + APL+E+ R L+LYP+ +N++ + LL + GI V+ G
Sbjct: 3 FQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAEKLDLLKKFGISVSGLGH 62
Query: 231 SPHPHAAHR 257
HPH H+
Sbjct: 63 QAHPHPFHK 71
Score = 37.9 bits (84), Expect = 0.22
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLHNXR 624
LF P++ SLY S++VPAE+++ SL+P++Y R
Sbjct: 156 LFLRIPNLNSLYASVVVPAESSFTDHSLYPEVYQYKTIR 194
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 101 bits (241), Expect = 2e-20
Identities = 44/82 (53%), Positives = 59/82 (71%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
IET LLF HW+ +A V ++VM+MKP KF+KL +NPNF+ L+N+R T D RYP ++
Sbjct: 73 IETFLLFNHWSFMATVQASVMFMKPSKFKKLASVNPNFSELVNYRLTAADSVRYPSTSTS 132
Query: 440 PVETEVAFMHDALMFITPSQIL 505
+ E+ FMHDALM+ PSQIL
Sbjct: 133 LPKYEIVFMHDALMYFNPSQIL 154
Score = 54.0 bits (124), Expect = 3e-06
Identities = 21/69 (30%), Positives = 41/69 (59%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
F ++ LA++ H+D+ P++ +A+ + LQ +P+ + + +P L GI + +G
Sbjct: 3 FELALNALASSTHKDSSLNPVLNSAVQPLQTSLQNFPWIIGKEHLPFLLAAGIPTSGFGC 62
Query: 231 SPHPHAAHR 257
+PHPHA H+
Sbjct: 63 NPHPHAVHK 71
Score = 33.1 bits (72), Expect = 6.1
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYS 609
LF PS+ L+ SL+VP E+++ SL P+LY+
Sbjct: 156 LFIQCPSLQRLHCSLVVPPESSFTDLSLHPNLYT 189
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 100 bits (239), Expect = 4e-20
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
IE HLLFEHW L R PS+V++MKP KF KLQ N NFA L N+ +DITRYP ++P
Sbjct: 204 IEIHLLFEHWMGLCRQPSSVLFMKPSKFSKLQARNNNFAELCNYSLVARDITRYPETSPT 263
Query: 440 PVETEVAFMHDALMFITPSQILG 508
P E FMHD++M+++ ++ G
Sbjct: 264 PPECSTWFMHDSIMYLSAEEVAG 286
Score = 63.7 bits (148), Expect = 4e-09
Identities = 28/66 (42%), Positives = 36/66 (54%)
Frame = +3
Query: 60 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPH 239
LV+ L T+HRD + +PLVE A R LQLYPY + + L GI + YG H
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDIPQEHAKFLQTCGIQASGYGYKTH 196
Query: 240 PHAAHR 257
PH H+
Sbjct: 197 PHPVHK 202
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 95.9 bits (228), Expect = 8e-19
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
+ET LL +HW+ L PSTV++MKP KFQKLQ+ NPNF L N+R T D RYP ++
Sbjct: 73 LETFLLHQHWSFLCVTPSTVLFMKPSKFQKLQRKNPNFQELKNYRLTSSDTVRYPTTSTT 132
Query: 440 PVETEVAFMHDALMFITPSQILG-FSRTP 523
TE FM DALM+ PSQI F ++P
Sbjct: 133 LPTTESVFMQDALMYFHPSQICDLFLKSP 161
Score = 64.1 bits (149), Expect = 3e-09
Identities = 24/69 (34%), Positives = 43/69 (62%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
F + ++ L +T HRDA++ P++ + + + L+ YP+ + + +P LN GI +S+GT
Sbjct: 3 FQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPWLLPKEALPFLNNQGIPASSFGT 62
Query: 231 SPHPHAAHR 257
PHPH H+
Sbjct: 63 MPHPHPIHK 71
Score = 33.5 bits (73), Expect = 4.6
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYS 609
LF SP++ L+ SL++P E+++ SL P++Y+
Sbjct: 156 LFLKSPNIQKLFCSLVIPPESSFTDLSLHPEIYT 189
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 94.7 bits (225), Expect = 2e-18
Identities = 43/81 (53%), Positives = 55/81 (67%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
IET+LL W+H A PS VM+MKP KF+KL+ PNF+ L N+R T KD TRYP ++P
Sbjct: 161 IETNLLSNVWSHYATTPSGVMFMKPSKFEKLRIKQPNFSKLYNYRITAKDSTRYPSTSPD 220
Query: 440 PVETEVAFMHDALMFITPSQI 502
+ FMHDALM+ +P QI
Sbjct: 221 LPTEDTCFMHDALMYYSPGQI 241
Score = 56.0 bits (129), Expect = 8e-07
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = +3
Query: 69 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHA 248
+LA T HRD I PL+E +R L YP+ + + L P L GI G HPH
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHP 156
Query: 249 AHR 257
H+
Sbjct: 157 VHK 159
Score = 39.9 bits (89), Expect = 0.053
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLY 606
LF PS+ LY SL+VP E+ + SLFPDLY
Sbjct: 244 LFISRPSLQKLYASLVVPPESDFTTISLFPDLY 276
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 94.3 bits (224), Expect = 2e-18
Identities = 47/89 (52%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
IET LL HW+ A PS+VM+MKP KF KL Q+N NF L N+R P D TRYP ++P
Sbjct: 73 IETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHPNDSTRYPFTSPD 132
Query: 440 PVETEVAFMHDALMFITPSQILG-FSRTP 523
FMHDALM+ PSQI+ F R P
Sbjct: 133 LPVFPTIFMHDALMYYHPSQIMDLFLRKP 161
Score = 71.3 bits (167), Expect = 2e-11
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
F +D LA T HRD P++E+ + + R +Q YP+ + +L+PLLN GI + GT
Sbjct: 3 FQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGLGT 62
Query: 231 SPHPHAAHR 257
S HPHAAH+
Sbjct: 63 SHHPHAAHK 71
Score = 34.7 bits (76), Expect = 2.0
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 484 HYPFPNFRLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLHNXR 624
++P LF P++ LY SL+VP EA S +P LY+ R
Sbjct: 148 YHPSQIMDLFLRKPNLERLYASLVVPPEAHLSDQSFYPKLYTYTTTR 194
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 79.4 bits (187), Expect = 7e-14
Identities = 33/78 (42%), Positives = 55/78 (70%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
F +D L++T HRD+I+APL+++++S + L+L+PY V +L+P LN++GI V+ +
Sbjct: 3 FQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELVPQLNRMGIQVSGLTS 62
Query: 231 SPHPHAAHRP*KLTSCLN 284
+PHPHAAH+ +L N
Sbjct: 63 TPHPHAAHKTLELNLLFN 80
Score = 78.2 bits (184), Expect = 2e-13
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP-VSNP 436
+E +LLF HW V S V++MKP KF KLQ+ N +F SL N+R P D RYP S
Sbjct: 73 LELNLLFNHWAKSCNVDSAVVFMKPSKFFKLQEKNSHFKSLHNYRLHPHDSNRYPHPSTS 132
Query: 437 HPVETEVAFMHDALMFITPSQILG 508
P E ++HD+LM+ TP QI G
Sbjct: 133 LPTEKRF-YIHDSLMYFTPHQISG 155
Score = 37.1 bits (82), Expect = 0.38
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDL--YSLH 615
LF+ P++ SLY SL+VP E++ SL PDL YS+H
Sbjct: 156 LFESCPNLLSLYASLVVPPESSMTDLSLNPDLYRYSIH 193
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 71.7 bits (168), Expect = 1e-11
Identities = 43/93 (46%), Positives = 55/93 (59%), Gaps = 10/93 (10%)
Frame = +2
Query: 260 IETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLN-------PNFASLINFRHTPKDITR 418
IETHLL EHW + A +PSTVM+MK KF KL+ N NF L+N T +D R
Sbjct: 186 IETHLLHEHWANRATLPSTVMFMKRSKFDKLRVSNAALVKSASNFLHLLNPILTARDADR 245
Query: 419 Y---PVSNPHPVETEVAFMHDALMFITPSQILG 508
Y P+ + P T + FMH +LM+ +PSQI G
Sbjct: 246 YTHLPLPDTLP-STPLYFMHHSLMYFSPSQIAG 277
Score = 55.6 bits (128), Expect = 1e-06
Identities = 26/69 (37%), Positives = 35/69 (50%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 230
F +D L NTI +D I + ++ + L LYPY + + LNQ GI TSYG
Sbjct: 116 FQPAIDFLHNTIQKDTIASSIIAALNPSLTSSLTLYPYALPPRWPSALNQAGIPATSYGH 175
Query: 231 SPHPHAAHR 257
HPH H+
Sbjct: 176 QSHPHPIHK 184
Score = 34.3 bits (75), Expect = 2.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLY 606
LF +P + LY SL++PAE+ G FP LY
Sbjct: 278 LFLAAPFLERLYASLVLPAESTIGSHPFFPSLY 310
>UniRef50_Q65979 Cluster: Brazilian strain defective RNA, complete
sequence; n=2; Cassava common mosaic virus|Rep:
Brazilian strain defective RNA, complete sequence -
Cassava common mosaic virus
Length = 300
Score = 54.0 bits (124), Expect = 3e-06
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Frame = +2
Query: 257 AIETHLLFEHWNHLARV-PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP--- 424
A+E L ++L R P T M+MKP K Q L++ + +N PKD+ RYP
Sbjct: 73 ALELDLYHSVSHYLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSWVEPKDLARYPEQT 132
Query: 425 -VSNPHPVETEVAFMHDALMFITPSQI-LGFSRTP 523
V P++T +AFM D L F+TP + F+R+P
Sbjct: 133 VVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSP 167
Score = 37.9 bits (84), Expect = 0.22
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 481 VHYPFPNF--RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
+H+ P F LF SP + + Y ++++P EA + + SL+P +Y+L
Sbjct: 151 LHFLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTL 196
>UniRef50_Q3MLL0 Cluster: Putative movement protein; n=1; Nemesia
ring necrosis virus|Rep: Putative movement protein -
Nemesia ring necrosis virus
Length = 632
Score = 51.2 bits (117), Expect = 2e-05
Identities = 32/91 (35%), Positives = 48/91 (52%)
Frame = +1
Query: 256 GHRNSPPV*TLESSCQSSFYSNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QP 435
G+R+ P + LE S S +VYET ++ +T +PKL H L +H + H S+P
Sbjct: 74 GYRDLPALLPLELSSLHSQLRHVYETIKVSQTGGHQPKLRRTHQLSSHSRRHRSLPHHFL 133
Query: 436 SSCRN*SSVHARRSHVHYPFPNFRLFKDSPS 528
S + +HARR+ V Y N R F+ P+
Sbjct: 134 LSPPARNRLHARRADVLYAASNRRSFRTLPT 164
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 50.0 bits (114), Expect = 5e-05
Identities = 34/93 (36%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = +2
Query: 257 AIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVS-- 430
AIE L HL + P T YMKP K K ++ + IN PKDI RYP
Sbjct: 73 AIENDLYNTVAYHLPKEPVTFYYMKPGKLGKFRRGPQHKDKFINSLFEPKDIARYPEETV 132
Query: 431 ----NPHPVETEVAFMHDALMFITPSQILGFSR 517
P T AFM D L F P Q++ R
Sbjct: 133 VKHLEESPCSTSNAFMGDTLHFFKPEQLMTLFR 165
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1
Query: 430 QPSSCRN*SSVHARRSHVHYPFPNFRLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYS 609
+ S C ++ H P LF+ SP + +LY +L++PAEA + +PSL P +YS
Sbjct: 137 EESPCSTSNAFMGDTLHFFKPEQLMTLFRLSPKLKTLYATLVLPAEAMHELPSLHPHIYS 196
Query: 610 L 612
L
Sbjct: 197 L 197
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3;
root|Rep: RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 47.6 bits (108), Expect = 3e-04
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Frame = +2
Query: 164 SGKFQANPIAQSTRH----RSHLLWHFTSSSCRS*AIETHLLFEHWNHLARV-PSTVMYM 328
S F +P A T SH L + + AIE+ L ++L + P T ++M
Sbjct: 38 SNPFAQSPAAADTLELLGINSHPLAITPHTHAAAKAIESDLYEVTSHYLPKENPVTFLFM 97
Query: 329 KPEKFQKLQQLNPNFASLINFRHTPKDITRYP----VSNPHPVETEVAFMHDALMFITPS 496
KP K + + + +N PKD+ RYP + N + T +AFM D L F+ PS
Sbjct: 98 KPSKLRYFHRGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPS 157
Query: 497 QILG-FSRTP 523
I F+R+P
Sbjct: 158 FITSLFARSP 167
Score = 41.9 bits (94), Expect = 0.013
Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Frame = +1
Query: 481 VHYPFPNF--RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
+H+ P+F LF SP + +LY ++++P EA Y + SL+P++Y+L
Sbjct: 151 LHFLEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSLYPEVYTL 196
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 47.2 bits (107), Expect = 4e-04
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 314 TVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH---PVETEVAFMHDALMF 484
T++ +K K L + NPN N+ + PKD+ RY ++NP+ V+TE A + D L F
Sbjct: 93 TLIQLKRGKLHLLGR-NPNLDRFQNYCYEPKDVLRYGLTNPNSCPKVDTEYAVLADTLHF 151
Query: 485 ITPSQILG-FSRTP 523
++P Q+ FS+ P
Sbjct: 152 MSPKQLYTLFSKNP 165
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +1
Query: 433 PSSCRN*SSVHARRSH-VHYPFPN--FRLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDL 603
P+SC + +A + +H+ P + LF +P + L+ +L++P EA + +PSLFPD+
Sbjct: 132 PNSCPKVDTEYAVLADTLHFMSPKQLYTLFSKNPKLERLFATLVLPIEALHKLPSLFPDV 191
Query: 604 YSL 612
Y L
Sbjct: 192 YKL 194
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase
RdRp; n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 46.8 bits (106), Expect = 5e-04
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +1
Query: 505 RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLH 615
RLF +SP++ +LY ++++P EAAY PS +PDLY ++
Sbjct: 160 RLFINSPNLDTLYATIVLPVEAAYRQPSRYPDLYQIN 196
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase
- Garlic virus C
Length = 1550
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +2
Query: 290 NHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH---PVETEVA 460
++L + P T++ +K K L++ P + N+ H PKD+ R+ ++NPH V T A
Sbjct: 84 HYLPKDPITLIQLKRSKLHLLKR-GPTDDAFQNYCHEPKDVLRFGLTNPHTCPTVTTSCA 142
Query: 461 FMHDALMFITPSQILG-FSRTP 523
+ D L F++ Q+ F+R P
Sbjct: 143 VISDTLHFMSSQQLWTLFARNP 164
Score = 41.9 bits (94), Expect = 0.013
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
LF +P++ LY +L++P EA + +PSLFP++Y L
Sbjct: 159 LFARNPALQRLYGTLVLPVEALHKLPSLFPEIYKL 193
>UniRef50_O91259 Cluster: Overlapping protein; n=1; Physalis mottle
virus|Rep: Overlapping protein - Physalis mottle virus
(PhMV) (Belladonna mottle virus-Iowa)
Length = 666
Score = 44.4 bits (100), Expect = 0.002
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = +1
Query: 259 HRNSPPV*TLESSCQSSFYSNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPS 438
HRN +L C S + +V+ET +IP+ S + +L L ++ H +PR +
Sbjct: 75 HRNPSSFHSLAPPCSSPIHCDVHETFQIPEASGHQSQLLSSPQLPSNLGRHLPIPRDVNA 134
Query: 439 SCRN*SSVHARRSHVHYPFPNFR 507
+ +HARRSHV P N R
Sbjct: 135 LANHDKLLHARRSHVLPPLSNSR 157
>UniRef50_A5JPL2 Cluster: Putative movement protein; n=1; Okra
mosaic virus|Rep: Putative movement protein - Okra
mosaic virus
Length = 671
Score = 44.4 bits (100), Expect = 0.002
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +1
Query: 262 RNSPPV*TLESSCQSSFYSNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSS 441
RN P + L++ + + S+++ET E+ + S ++P+L P L HP+G HS S
Sbjct: 76 RNPPSLQPLDTPRRPARLSSLHETPEVSQASKVEPQLPTPPQLPHHPEGLHSFSFFLHDS 135
Query: 442 CRN*SSVHARRSHVHYPFPN 501
++ HARR HV P+
Sbjct: 136 PKHPRRFHARRPHVLSSLPD 155
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 44.4 bits (100), Expect = 0.002
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Frame = +2
Query: 314 TVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHP---VETEVAFMHDALMF 484
T++ +K K L + P+ + N+ H PKD+ RY +++P+ V TE A + D L F
Sbjct: 93 TLIQLKRSKIHLLGR-QPSQDNFQNYCHEPKDVLRYGITHPNSCPVVNTEYAVLADTLHF 151
Query: 485 ITPSQILG-FSRTP 523
++P Q+ FSR P
Sbjct: 152 MSPRQLYHLFSRNP 165
Score = 43.6 bits (98), Expect = 0.004
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +1
Query: 457 SVHARRSHVHYPFPNFRLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
+V A H P + LF +P + L+ +L++P EA + +PSLFPD+Y L
Sbjct: 143 AVLADTLHFMSPRQLYHLFSRNPKLERLFATLVLPIEAQHRLPSLFPDVYRL 194
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus
X|Rep: Replicase protein - Nerine virus X
Length = 1504
Score = 43.2 bits (97), Expect = 0.006
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Frame = +2
Query: 257 AIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLI-NFRHTPKDITRYP--- 424
AIE +L ++L + P T M++K K + L++ +P + + N+ P+D+ RYP
Sbjct: 73 AIENQMLSIVGHNLPKRPVTYMFLKKSKLRYLRR-DPRISDVFQNYEIEPRDVARYPPET 131
Query: 425 -VSNPHPVETEVAFMHDALMFITPS 496
+ V T+VA++ D L F+ P+
Sbjct: 132 VLKRFTVVNTDVAYISDTLHFLRPT 156
Score = 38.3 bits (85), Expect = 0.16
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +1
Query: 481 VHYPFPNF--RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLH 615
+H+ P F LF+ S ++ +LY ++++P EA + +PSL P+LY ++
Sbjct: 150 LHFLRPTFLTALFERSHNLQTLYATMVLPPEALHKLPSLEPNLYQIN 196
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Plantago asiatica mosaic potexvirus (P1AMV)
Length = 1385
Score = 42.3 bits (95), Expect = 0.010
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +2
Query: 308 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP----VSNPHPVETEVAFMHDA 475
P + ++MKP K + + + +N PKD+ RYP ++ + T++AFM D
Sbjct: 91 PVSFLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQIAFMGDT 150
Query: 476 LMFITPSQILG-FSRTP 523
L F++PS + F+ +P
Sbjct: 151 LHFLSPSFLTALFAHSP 167
>UniRef50_Q66339 Cluster: Non-structural/coat protein fusion
product; n=5; Clover yellow mosaic virus|Rep:
Non-structural/coat protein fusion product - Clover
yellow mosaic virus (CYMV)
Length = 312
Score = 41.5 bits (93), Expect = 0.018
Identities = 17/46 (36%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Frame = +1
Query: 481 VHYPFPNF--RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
+H+ P+F +LF +P + ++ ++++P EA YG+ SL+P++YSL
Sbjct: 151 LHFLPPSFLTKLFARNPKIQTVLATMVLPTEALYGLTSLYPNVYSL 196
Score = 40.3 bits (90), Expect = 0.040
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Frame = +2
Query: 257 AIETHLLFEHWNHLARV-PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSN 433
AIE L + + + P T M+MK K Q ++ + IN PKD+ RY
Sbjct: 73 AIENDLYYIASTRMTKEEPVTFMFMKRAKLQYFRRGPQQNDTFINQIVEPKDVARYDEDT 132
Query: 434 PH----PVETEVAFMHDALMFITPSQILG-FSRTP 523
H +ET+ F+ D L F+ PS + F+R P
Sbjct: 133 LHSTIPTIETKTVFIGDTLHFLPPSFLTKLFARNP 167
>UniRef50_P20129 Cluster: 70 kDa protein; n=1; Eggplant mosaic
virus|Rep: 70 kDa protein - Eggplant mosaic virus
Length = 649
Score = 40.3 bits (90), Expect = 0.040
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 262 RNSPPV*TLESSCQSSFYSNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSS 441
R+ PV +L S +F +V+ET ++ KT KPK+ L H + HHS+P
Sbjct: 76 RDFSPVQSLACSRSPAFNCDVHETVQVSKTCGSKPKIPRVDQLSTHCRRHHSLPLHLTHF 135
Query: 442 CRN*SSVHARRSHV 483
+ + +HAR S V
Sbjct: 136 SKQFNLLHARCSDV 149
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep:
Replicase - Hosta virus X
Length = 1507
Score = 39.9 bits (89), Expect = 0.053
Identities = 13/36 (36%), Positives = 27/36 (75%)
Frame = +1
Query: 505 RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
RLF +P++ +LY ++++P EA Y + S++P++Y +
Sbjct: 160 RLFLKNPNLNTLYATMVLPPEAMYRMASIYPEIYQI 195
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus
X|Rep: ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 39.1 bits (87), Expect = 0.093
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +1
Query: 505 RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLH 615
+LF DSP +T+L ++++P EA + SL+P LYS++
Sbjct: 160 QLFVDSPKLTTLLATVVLPVEALHRRSSLYPALYSIN 196
Score = 36.7 bits (81), Expect = 0.50
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +2
Query: 233 TSSSCRS*AIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDI 412
T ++C+ AIE +L HL + T++++K K + L++ IN PKD+
Sbjct: 67 THAACK--AIENRMLEIVGKHLPKEKVTMLFLKKSKLRYLRRAAALNDVFINKDMEPKDL 124
Query: 413 TRY---PVSNP-HPVETEVAFMHDALMFI 487
RY + N V+T +A+M D L F+
Sbjct: 125 FRYDRDTIRNSLQNVDTSLAYMSDTLHFM 153
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Papaya mosaic potexvirus (PMV)
Length = 1547
Score = 39.1 bits (87), Expect = 0.093
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 505 RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
R+FK SP + +LY ++++P EA + + SL P +Y L
Sbjct: 163 RIFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYEL 198
Score = 35.1 bits (77), Expect = 1.5
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +2
Query: 308 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPV-----SNPHP-VETEVAFMH 469
P+T M+MK K Q ++ +N PKD+ RY V N P + T AFM
Sbjct: 91 PTTFMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMG 150
Query: 470 DALMFI 487
D L F+
Sbjct: 151 DTLHFL 156
>UniRef50_Q3BD97 Cluster: Putative movement protein; n=1; Plantago
mottle virus|Rep: Putative movement protein - Plantago
mottle virus
Length = 627
Score = 38.7 bits (86), Expect = 0.12
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 262 RNSPPV*TLESSCQSSFYSNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSS 441
R+S + LESSC S +S+V+ET ++ +T + +L H +H S+ R S
Sbjct: 76 RDSSSLSPLESSCVDSIFSHVHETIKVSQTCETQSELRRAHQFSSHRCRQRSLSRNLHIS 135
Query: 442 CRN*SSVHARRSHV 483
VHARR+ V
Sbjct: 136 ALPADCVHARRADV 149
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato
virus X|Rep: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X
(PVX)
Length = 1456
Score = 38.7 bits (86), Expect = 0.12
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +1
Query: 481 VHYPFPNF--RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
+H+ P++ F++ P + +LY +L++P EAA+ + S P++YSL
Sbjct: 150 LHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSL 195
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Narcissus mosaic virus (NMV)
Length = 1643
Score = 38.7 bits (86), Expect = 0.12
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = +1
Query: 505 RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLH 615
+LF+DSP + +L ++++P EA + SL+P LYS++
Sbjct: 160 QLFEDSPKLETLLATVVLPVEALHKRTSLYPSLYSIN 196
>UniRef50_P79950 Cluster: Tyrosine kinase receptor; n=3;
Xenopus|Rep: Tyrosine kinase receptor - Xenopus laevis
(African clawed frog)
Length = 1369
Score = 38.3 bits (85), Expect = 0.16
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +2
Query: 314 TVMYMKPEKFQKLQQLNPNFASLINF----RHTPKDITRYPVSNPHPVETEVAFMHDALM 481
T MY++P++ + L + L+ P+ ++ + +S+ HPV EV + D+L
Sbjct: 431 TSMYVRPQEDLTIGFLGTSVGRLLQVVLQRNSKPRTLSNFSISDTHPVSREVTRIRDSLF 490
Query: 482 FITPSQI 502
FIT +Q+
Sbjct: 491 FITGNQV 497
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 38.3 bits (85), Expect = 0.16
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 481 VHYPFPNF--RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLH 615
+HY P +F SP + +L ++++P EA + SL+P++Y+LH
Sbjct: 149 LHYFQPEVLEHIFTSSPQLETLLATIVLPPEATLRLKSLYPEIYTLH 195
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 320 MYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHP----VETEVAFMHDALMFI 487
++MKP K Q ++ + + IN KD+ RYP+ +P + T++AF+ D+L +
Sbjct: 94 LFMKPSKMQYFRRRG-DVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYF 152
Query: 488 TP 493
P
Sbjct: 153 QP 154
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus
X|Rep: 158kDa replicase - Botrytis virus X
Length = 1413
Score = 37.1 bits (82), Expect = 0.38
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 505 RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
+LF +P++ LY +L++P EA + +PSL P Y+L
Sbjct: 161 QLFHHNPNLHLLYATLVLPVEALHNLPSLNPHAYTL 196
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 37.1 bits (82), Expect = 0.38
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +2
Query: 293 HLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPV---ETEVAF 463
HL + PST +++K K + L++ N N PKD+ RY + + T A+
Sbjct: 85 HLPKEPSTFIFLKRSKLRYLRRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAY 144
Query: 464 MHDALMFITPSQI 502
+ DAL F++ +Q+
Sbjct: 145 ISDALHFLSYAQL 157
Score = 34.3 bits (75), Expect = 2.7
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 505 RLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLH 615
++F+DSP + +L++P E+ + PSL P +Y+L+
Sbjct: 159 KIFQDSPKLKIQLATLVLPVESLHRHPSLHPAIYTLN 195
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White
clover mosaic virus (strain O) (WCMV)
Length = 1294
Score = 37.1 bits (82), Expect = 0.38
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +1
Query: 508 LFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSLH 615
LF +P++ LY +L++P EA + PS+ PDLY+++
Sbjct: 161 LFFHNPALDVLYATLVLPPEALHKHPSIEPDLYTIN 196
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 36.3 bits (80), Expect = 0.66
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 490 PFPNFRLFKDSPSMTSLYXSLIVPAEAAYGVPSLFPDLYSL 612
P + LF SP M SL + ++P E+ +P+ +P+LY L
Sbjct: 158 PLDVYTLFATSPEMHSLVATAVIPPESVDRLPAFWPELYQL 198
Score = 35.9 bits (79), Expect = 0.87
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Frame = +2
Query: 329 KPEKFQKLQ-QLNPNFASLI--NFRHTPKDITRYP---VSNPHPVETEVAFMHDALMFIT 490
K F+KLQ Q++ +L N+ T +D RYP V +P FMHDAL ++T
Sbjct: 98 KDNWFRKLQAQIDSQTTTLTHRNYAITARDHVRYPGTVVDHPGSCTAGTLFMHDALQYMT 157
Query: 491 PSQI 502
P +
Sbjct: 158 PLDV 161
>UniRef50_Q4Q2P2 Cluster: Protein kinase, putative; n=3;
Leishmania|Rep: Protein kinase, putative - Leishmania
major
Length = 940
Score = 36.3 bits (80), Expect = 0.66
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 62 SRYSRQHHPPRRHNGSP-SGNRHQQFPSQASTLPISGKFQANPIAQSTR 205
SR+S +HH R+H +P SG+ H Q P Q + P + IA + R
Sbjct: 98 SRHSYRHHQGRQHGSTPRSGSGHSQSPEQPALRPQQATLGVSHIAPAAR 146
>UniRef50_Q32WC8 Cluster: Overlapping protein p62; n=1; Dulcamara
mottle virus|Rep: Overlapping protein p62 - Dulcamara
mottle virus
Length = 576
Score = 35.1 bits (77), Expect = 1.5
Identities = 25/70 (35%), Positives = 32/70 (45%)
Frame = +1
Query: 274 PV*TLESSCQSSFYSNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSSCRN* 453
P TLE S +S ++ET E+ K KP+ L AH H V S N
Sbjct: 80 PTPTLELPLCHSLHSPLHETLEVSKAPTEKPQFPGVKKLPAHVIRHRPVSHHLHHSSHNR 139
Query: 454 SSVHARRSHV 483
+HARRS+V
Sbjct: 140 VRLHARRSNV 149
>UniRef50_Q22WD6 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 335
Score = 33.5 bits (73), Expect = 4.6
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 281 EHWNHLARVPSTVMYMKPEKFQ-KLQQLNPNFASLINFRHTPKDITR 418
+++NHL P+ + + FQ + ++LNPNF L+ F+ K +T+
Sbjct: 230 QYFNHLLSHPNCINFQTQMLFQFEDKELNPNFKPLVEFQDKVKSLTQ 276
>UniRef50_Q5BE57 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 353
Score = 33.5 bits (73), Expect = 4.6
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +2
Query: 62 SRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 226
SR SRQ H HN SPS + H + Q +P+ A PI H LW
Sbjct: 37 SRQSRQRH--LTHNPSPSSSHHDRQRQQQQAVPLQQHINA-PIRPHIWHSKKRLW 88
>UniRef50_A6R238 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 695
Score = 33.5 bits (73), Expect = 4.6
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 74 RQHHP--PRRHNGSPSGNRHQQFPSQA--STLPISGKFQANPIAQSTRHRSHLLWHFTSS 241
RQHHP R H S S ++ + QA S+ +SG A PI+ RHR + H SS
Sbjct: 586 RQHHPLVARAHARSQSQSQRSRARQQAQWSSTSVSGSSVAGPISPLLRHR---IRH-PSS 641
Query: 242 SCRS 253
SC S
Sbjct: 642 SCTS 645
>UniRef50_Q5CHK1 Cluster: Asparagine-rich protein; n=2;
Cryptosporidium|Rep: Asparagine-rich protein -
Cryptosporidium hominis
Length = 1243
Score = 33.1 bits (72), Expect = 6.1
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 53 HQFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKF-QANPIAQSTRHRSH 217
HQ ++ +QHH + H G Q P Q S I F Q + S+ H SH
Sbjct: 252 HQ-QQHQQQHHQQQHHQQQHQGQNTTQHPKQVSQRQIPSNFQQKHQTYSSSSHNSH 306
>UniRef50_Q8CDV4 Cluster: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4921513B05 product:hypothetical
RING finger containing protein, full insert sequence;
n=2; Murinae|Rep: Adult male testis cDNA, RIKEN
full-length enriched library, clone:4921513B05
product:hypothetical RING finger containing protein,
full insert sequence - Mus musculus (Mouse)
Length = 233
Score = 32.7 bits (71), Expect = 8.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 44 HGFHQFSRYSRQH-HPPRRHNGSPSGN-RHQQFP 139
H +H+F RY +H HPP H G P R Q +P
Sbjct: 137 HQYHRFGRYRHRHRHPPIFHRGPPHPPVRRQLYP 170
>UniRef50_A6PS51 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 581
Score = 32.7 bits (71), Expect = 8.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 126 WRFPLGEPLWRLGGWC 79
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
>UniRef50_A6EW18 Cluster: Putative uncharacterized protein; n=1;
Marinobacter algicola DG893|Rep: Putative
uncharacterized protein - Marinobacter algicola DG893
Length = 211
Score = 32.7 bits (71), Expect = 8.1
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +2
Query: 275 LFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETE 454
+F HW A VP ++ +P QKL L+ +I+ P +ITR+ + H TE
Sbjct: 58 VFAHWTLAAIVPQSLTIEEPVTLQKLNDLS---VLIISGYVYPDNITRW--AETHQDITE 112
Query: 455 VAFMHDALMFITPSQILGFSR 517
+ + D + P ++L F R
Sbjct: 113 ITYSADGEGMV-PFRMLEFGR 132
>UniRef50_Q9VCM2 Cluster: CG4374-PA; n=1; Drosophila
melanogaster|Rep: CG4374-PA - Drosophila melanogaster
(Fruit fly)
Length = 858
Score = 32.7 bits (71), Expect = 8.1
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 53 HQFSRYSRQHH--PPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 226
HQ + Q+H PP HNG + N + Q PI+ + Q + TR S+ +
Sbjct: 58 HQQQQQHHQNHQQPPHSHNGHNNNNNNNNNHVQVVHQPITSQSQQQSLCGGTRTNSNNMI 117
Query: 227 H 229
H
Sbjct: 118 H 118
>UniRef50_Q0UAC5 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 1358
Score = 32.7 bits (71), Expect = 8.1
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 68 YSRQHHPPRRHNGSPSG---NRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW--HF 232
Y +Q H P H +PSG R P+ + P S A P +QST HL H
Sbjct: 58 YRKQQHTPNPHIETPSGKTLRRKAAAPTLNTAKPKSSVQTARPQSQSTSRPLHLSHSAHQ 117
Query: 233 TSSSCRS*AIETHLLFEHWNHLARVPS 313
+ S RS E LL NHL R S
Sbjct: 118 LNISHRS-PFEQQLLA---NHLGRAQS 140
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,098,711
Number of Sequences: 1657284
Number of extensions: 15356780
Number of successful extensions: 36309
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 34698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36257
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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