Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060843.seq
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   3.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   3.0  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   5.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 74  RQHHPPRRHNGSPSGNRHQQ 133
           RQ  PP  + G PSG +  Q
Sbjct: 57  RQGIPPHHYGGPPSGGQPPQ 76


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 86  PPRRHNGSPSGNRHQQFPSQASTLP 160
           P    + SPSG+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 86  PPRRHNGSPSGNRHQQFPSQASTLP 160
           P    + SPSG+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 269 HLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNF 373
           ++LF       R+P  +    P KFQ L +L P F
Sbjct: 187 NILFSAEGVEIRIPDVIKTSGPHKFQPLLRL-PKF 220


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 335 EKFQKLQQLNPNFASLI 385
           E+ QKL++ NP+  +L+
Sbjct: 149 ERIQKLKKANPSLKTLL 165


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 220 PMALHLILMPLIGHRNSPP 276
           P   H  L+PL    NSPP
Sbjct: 54  PAFFHPGLLPLAWQANSPP 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,572
Number of Sequences: 336
Number of extensions: 3748
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)