Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060843.seq
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   4.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.2  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    26   5.6  

>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 98  HNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTR 205
           +NG PSG R +      ST  IS  F   P A  +R
Sbjct: 10  NNGLPSGEREESETPGGSTSIISSSFLLQPRASDSR 45


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 407 DITRYPVSNPHPVETEVAFMHDALMFITPSQI 502
           D    P+S PH + T    ++DA + + P Q+
Sbjct: 179 DFNIQPLSVPHEIITSYGLVNDAWLSVYPDQV 210


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
 Frame = +2

Query: 140 SQASTLPISGKFQANPIAQSTRHRSHLLWHFTSSSCRS*AIETHLLFEHWNHLARVPSTV 319
           + +STL  S    + P A S+ H S L  H +SSS +S +      F H +  +R  S  
Sbjct: 378 TSSSTLTSSSSSSSRP-ASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHS 436

Query: 320 MYMKPEKFQKLQQLNPNFASLI-NFRHTPKDITRYPVS 430
                        L  + +SL+ +  HT +  T Y V+
Sbjct: 437 SSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYVVT 474


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 141 HKLQLYPYQVNSKLIPLLNQLGIGVTSY 224
           H+++L+P+   ++ +    +LGI VT+Y
Sbjct: 188 HQMELHPFLPQTEFVEKHKKLGIHVTAY 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,634
Number of Sequences: 5004
Number of extensions: 63719
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)