Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060843.seq
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100... 32 0.47
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 30 1.4
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709... 30 1.9
01_01_0012 + 71903-72935,73468-73981,74619-76008 30 1.9
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 29 2.5
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 29 3.3
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 29 3.3
04_03_0447 + 16015043-16015489,16017358-16017530,16017906-160180... 28 5.8
11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,767... 28 7.6
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 28 7.6
03_05_0927 - 28874819-28877098,28877689-28877691 28 7.6
>07_03_0037 +
12709014-12709104,12709407-12709612,12710033-12710097,
12710143-12710404,12711332-12711448,12711779-12712056,
12712304-12712406
Length = 373
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Frame = +2
Query: 356 QLNPNFASLINFRHTPKDITRYPVSNPHPV-------ETEVAFMHDALMFITPSQILGF 511
+++P+ SL+++ PK R+PVS+P+ + E++ A++H L I +++ F
Sbjct: 309 EIDPSVPSLLDYYPLPKRGERFPVSDPNMMPRLQPRPESDTAYLHGILESIARIEVISF 367
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 224
F L + A+TI R P+ TA+ + + L+ + ++IPL +LGIG+ Y
Sbjct: 156 FVGLSEASADTIRRAHAVYPI--TAV---QMEWSLWTRDIEEEIIPLCRELGIGIVPY 208
>02_05_1335 -
35770403-35770543,35770630-35770755,35770859-35770942,
35771444-35771656,35771759-35771977
Length = 260
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 74 RQHHPPRRHNGSPSGNRHQQFPSQ-ASTLPISGKFQANPIAQSTRH 208
RQH R+H+ S S +H++ S T P+ N S+RH
Sbjct: 198 RQHRSERKHSSSASTTKHKRKSSSLKDTSPVGRTIDFNGADSSSRH 243
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 62 SRYSRQHHPPRRH-----NGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 226
SR SR + PP RH + SPS + H ++ S S K+ + +S R R
Sbjct: 538 SRRSRSYSPPVRHTRGRRSRSPSRSYHSKYGSDRSYRDDRDKYGRSGRRESDRSRD---- 593
Query: 227 HFTSSSCRS 253
H++SSS R+
Sbjct: 594 HYSSSSRRN 602
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +2
Query: 356 QLNPNFASLINFRHTPKDITRYPVSNPHPVETEVAFMHDALMFITPS 496
Q +P+ L+NFRH K T P P T HD F PS
Sbjct: 223 QADPSVELLVNFRHGLKVETNGLAPPPPPPPTTTTNFHDDQHFCFPS 269
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 68 YSRQHHPPRRHNGSPSGNRHQQFPSQA 148
+ R H PP H PS Q+FP +A
Sbjct: 176 HDRHHEPPMSHKKFPSSAGEQRFPDRA 202
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 475 SHVHYPFPNFRLFKDSPSMTSLYXSLIVPA--EAAYGVPSLFPDLYSL 612
S + +P P FK+ S + S ++PA + Y S FP L +L
Sbjct: 783 SELRFPAPRILSFKEGSSQARYFVSRLIPAHKDPTYEQESRFPQLRTL 830
>04_03_0447 +
16015043-16015489,16017358-16017530,16017906-16018008,
16018177-16018521
Length = 355
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +3
Query: 51 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 224
+ L + A+TI R + P+ I + L+ V ++P +LGIG+ +Y
Sbjct: 164 YIGLSEASASTIRRAHVVHPITAVQI-----EWSLWSRDVEEDIVPTCRELGIGIVAY 216
>11_02_0042 - 7672565-7672729,7672902-7672977,7673409-7674132,
7674684-7674708,7675041-7675486,7676643-7676862,
7677609-7678459,7678697-7679555
Length = 1121
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 387 TSGTPQRTSLGTPLATLILSKLK*RSCTTLSCSLP-----LPKF*AFQGLPF 527
T + +R PL TL+ S ++ R T SC LP +PKF F GLP+
Sbjct: 1060 TEKSKRRKKKACPLQTLLKSFVQRRFKTRYSC-LPRSRAHIPKFREFDGLPW 1110
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 499 LGRGNEHESVVHERYFS-FDRMRVANGVPSDVLWGVPE 389
L G H+S + E FS FDR +V + P +GVP+
Sbjct: 403 LRTGEAHDSELPEYPFSEFDRGKVGSAYPRRPFYGVPD 440
>03_05_0927 - 28874819-28877098,28877689-28877691
Length = 760
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 272 LLFEHWNHLARVPSTVMYMKPEKFQKLQ 355
L+ EH NH PS V Y+ PE++ +L+
Sbjct: 121 LIKEH-NHAVAAPSIVRYVAPEEYAQLE 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,292,589
Number of Sequences: 37544
Number of extensions: 449455
Number of successful extensions: 967
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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