Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060843.seq
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   3.9  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    27   9.0  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 65  RYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAN 184
           +   + HPP+ H GSP      Q P      P  G+F  N
Sbjct: 527 KVEHEQHPPQSH-GSPHPGPQYQGPPPRKEFPTPGRFVTN 565


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 287  WNHLARVPS-TVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETEVAF 463
            W    + PS T+ ++K   F     +      ++ +    + ++R  V  P  VE EV  
Sbjct: 854  WPESTKTPSGTIEWLKNSYFSGHHHIRAP-KRMLQWNRKFRKMSRAEVMTPTSVENEVIE 912

Query: 464  MHDALMFITPSQILGFSR 517
             ++  +F TP +   FSR
Sbjct: 913  YYEKNVFWTPDRRSDFSR 930


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 287  WNHLARVPS-TVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETEVAF 463
            W    + PS T+ ++K   F     +      ++ +    + ++R  V  P  VE EV  
Sbjct: 843  WPESTKTPSGTIEWLKNSYFSGHHHIRAP-KRMLQWNRKFRKMSRAEVMTPTSVENEVIE 901

Query: 464  MHDALMFITPSQILGFSR 517
             ++  +F TP +   FSR
Sbjct: 902  YYEKNVFWTPDRRSDFSR 919


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,778,232
Number of Sequences: 27780
Number of extensions: 362647
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)