Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060843.seq
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.12 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   7.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 445 DRMRVANGVPSDVLWGVPEVN 383
           + MR+ NG P+D LW VP ++
Sbjct: 375 NEMRLRNGCPADWLWIVPPIS 395


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 68  YSRQHHPPRRHNGSPSGNRHQQFPSQASTLP 160
           Y++QH+ P     SP+G+  Q   S AST P
Sbjct: 55  YAQQHNSP-----SPTGSSPQHSGSSASTSP 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 47  GFHQFSRYSRQHHPPRRHNGSPSGNRHQ 130
           GF   S +  QHHP + H    S   HQ
Sbjct: 310 GFLPPSYHPHQHHPSQYHPHRGSSPHHQ 337


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
 Frame = +2

Query: 53  HQFSRYSRQHHPPRRHNGSPSGNRH----QQFPSQASTLPISGKFQANPIAQ 196
           HQ  +  ++  PP    G P G        Q PSQ    P SG  Q   + Q
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQ 79


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 211 ESPPMALHLILMPLIG-HRNSPPV*TLESSCQSSFYSNVYE 330
           + PP+  H     +       PPV T+ S+C  S Y+ + E
Sbjct: 162 DKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTPLKE 202


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 619 DCVSCRDQGKVKALHKR 569
           +CV CR+ G+ +A +++
Sbjct: 39  ECVFCRNNGEEEAYYRK 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,552
Number of Sequences: 438
Number of extensions: 4452
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)