Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060843.seq
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65330.1 68418.m08218 MADS-box family protein contains Pfam p...    30   1.6  
At3g10070.1 68416.m01207 transcription initiation factor IID (TF...    30   1.6  
At3g12420.1 68416.m01547 hypothetical protein                          29   2.1  
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot...    28   4.8  
At1g60690.1 68414.m06832 aldo/keto reductase family protein cont...    28   4.8  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    28   6.4  
At1g60710.1 68414.m06834 aldo/keto reductase family protein cont...    28   6.4  
At1g10810.1 68414.m01241 aldo/keto reductase family protein cont...    28   6.4  

>At5g65330.1 68418.m08218 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL78
          Length = 341

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 326 MKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 439
           + P    + Q LNP+  SL  + H    +++ P+S PH
Sbjct: 147 LTPSYLNQTQHLNPSKFSLFMYNHGDATLSQLPLSAPH 184


>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 110 PSG-NRHQQFPSQASTLPISGKFQANPIAQSTRHRS 214
           PSG  +HQQ P+Q+S  P S     +P+AQ+ +  S
Sbjct: 216 PSGMTQHQQRPTQSSLRPASSTSTQSPVAQNFQGHS 251


>At3g12420.1 68416.m01547 hypothetical protein
          Length = 308

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 65  RYSRQHHPPRRHNGSPSGNRH---QQFPSQASTLPISGKFQANPIAQSTRHRSH 217
           RY   HHPPR ++ +P  NR+      P      P   ++ AN +  + R+  H
Sbjct: 79  RYYSDHHPPRSYDPNPPPNRYYSDHHPPRSYDRNPPPNRYDANDLPPN-RYYDH 131



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 62  SRYSRQHHPPRRHNGSPSGNRH 127
           +RY   HHPPR ++ +P  NR+
Sbjct: 97  NRYYSDHHPPRSYDRNPPPNRY 118


>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
           contains Pfam profile: PF00450 serine carboxypeptidase;
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 436

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 454 FSFDRMRVANGVPSDVLWGVPEVNEGSKVWV*LLKFLEFLRFHIHYCRRN-SGKMIPMFK 278
           FS+ R   A+ +PSD    V  VNE  + W  L K  E+     +    + SGK+IP   
Sbjct: 134 FSYSRNPFAD-IPSDT-GSVKRVNEFVRKW--LAKHPEYFSNPFYVTGNSYSGKVIPAIV 189

Query: 277 QEVS 266
           QE+S
Sbjct: 190 QEIS 193


>At1g60690.1 68414.m06832 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +3

Query: 51  FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 224
           +  L +  A+TI R     P+  TA+   + +  L+   V  +++P   +LGIG+ SY
Sbjct: 156 YIGLSEASASTIRRAHTVHPI--TAV---QLEWSLWTRDVEEEIVPTCRELGIGIVSY 208


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 63  VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLL 194
           + ++ N I +DA  A L +  + N    L+L PY   +K + LL
Sbjct: 304 IQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLL 347


>At1g60710.1 68414.m06834 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 345

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 51  FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 224
           +  L +  A+TI R     P+    I     +  L+   V  ++IP   +LGIG+ +Y
Sbjct: 156 YIGLSEASASTIRRAHAVHPITAVQI-----EWSLWTRDVEEEIIPTCRELGIGIVAY 208


>At1g10810.1 68414.m01241 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 344

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 51  FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 224
           +  L +  A+TI R     PL  TA+   + +  L+   V   +IP   +LGIG+ +Y
Sbjct: 156 YIGLSEACASTIRRAHAVHPL--TAV---QLEWSLWSRDVEEDIIPTCRELGIGIVAY 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,231,792
Number of Sequences: 28952
Number of extensions: 350306
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)