Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060841.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    28   1.5  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   2.5  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   4.4  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   5.9  

>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 472 NNVTNTLLQTG*LTKQDVRDFFNVAISTKMSLAYAI-NILQD 594
           ++++NT LQ   + +  +RDF+N +I  K  +  +I NI+ D
Sbjct: 265 SHLSNTCLQGDNVEQSSIRDFWNTSIENKDDIFKSILNIIGD 306


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 48  VTQRICKLFTYIRCLKCKFCSVLYNLLAVTSGW 146
           V+ RI ++F  +  +KC  CSV+++  +  S +
Sbjct: 240 VSNRIVRIFFLLSAMKCLGCSVIWHTFSSLSNY 272


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 239 NFYNTENNDCQEILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESD 397
           NF+  ++    + LN  +  K   EL+N  +++ KE+ +       F+ V SD
Sbjct: 122 NFHYIDHRQKDQGLNVRTRAKELVELLNDSERIRKERKRARQNRGKFIGVGSD 174


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 342 FHNCWSVFTNSLKCLQVELKLSISW 268
           FHN WS  + S+  L V L L   W
Sbjct: 224 FHNVWSSSSTSVPILSVVLALFFIW 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,912
Number of Sequences: 5004
Number of extensions: 52244
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)