Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060841.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    29   2.6  
06_03_0636 + 22983898-22985043                                         29   2.6  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    29   4.6  
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997...    28   6.0  

>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 275 ILNFSSTCKHFNELVNTDQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGFYYIKNY 454
           +LNF  +C    ELV     LW+E       D  +   E D H  DW   +K    +K++
Sbjct: 557 LLNFFRSCTELKELV-----LWRE-------DKVYFEEECDVHSDDWSSALKDIACLKSH 604

Query: 455 V 457
           +
Sbjct: 605 L 605


>06_03_0636 + 22983898-22985043
          Length = 381

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 359 LIPDAAFVVVESDCHDGD 412
           +IPD   VV+ SDCH GD
Sbjct: 327 VIPDGRVVVIGSDCHGGD 344


>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
            4437721-4437990,4438168-4438605,4438772-4439043,
            4439126-4439274,4439339-4439470,4439554-4439880,
            4439963-4440357,4440551-4440861,4441304-4441394,
            4441806-4441847
          Length = 1686

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 269  QEILNFSSTCKHFNELVNT-DQQLWKEKLKELIPDAAFVVVESDCHDGDWLEEIKGF 436
            QE+ + +    + N LV+  D +L+K +L+    D + VVV  DC   DW    + F
Sbjct: 904  QELQDATDFFSNNNVLVDLFDSKLYKGRLQ----DGSLVVVHMDCPTADWSRRTRQF 956


>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
            21500187-21500418,21500488-21500668,21501342-21501438,
            21501641-21501779,21502024-21502351,21502890-21503137,
            21503270-21503543,21504200-21504291,21504451-21504521,
            21505091-21505181,21506526-21507380,21507482-21507594,
            21508007-21508074,21508655-21508835,21509084-21509186,
            21509273-21509379,21510046-21511584,21511661-21511771,
            21511856-21511908,21511988-21512063,21512147-21512366,
            21512477-21512901,21513193-21513372,21513503-21515474
          Length = 2680

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 466  IENNVTNTLLQTG*LTKQDVRDFFNVAISTKMSLAYAINILQDF 597
            + + V   LLQ     K D+ +FF + +  KMS+A   N LQ F
Sbjct: 2179 VNHGVDGELLQR---IKDDITEFFRLPLQEKMSVAIPPNGLQGF 2219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,850
Number of Sequences: 37544
Number of extensions: 272992
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)