Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060841.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68114-11|CAA92154.1|  329|Caenorhabditis elegans Hypothetical p...    29   3.1  
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z68114-11|CAA92154.1|  329|Caenorhabditis elegans Hypothetical
           protein F17A2.5 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 122 IVQYTAEFTF*TSYVGKKFANSLSNNYNKMYCIVQVQPAC 3
           ++Q   EF   T    +KF N +S  +NK+ C V  Q AC
Sbjct: 136 VLQQQGEFRPITQQSTEKFMNKMSGKFNKV-CFVLKQTAC 174


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y113G7B.12 protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +3

Query: 39  VVIVTQRICKLFTYIRCLKCKFCSVLYNLLAVTSGWSSKSITT---TS*DLRKIHIMDEE 209
           V++   R CK       L  K  S  Y ++AVT  W  +S+++   TS  +  IH  D +
Sbjct: 372 VLLANVRSCKKLEKASQLCAKLHSNDYQIIAVTESWLQESVSSALFTSFGI-SIHRCDRD 430

Query: 210 LSIYS 224
           +++++
Sbjct: 431 VALHT 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,299
Number of Sequences: 27780
Number of extensions: 292992
Number of successful extensions: 670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)