Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060841.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15215.1 68417.m02332 ABC transporter family protein similar ...    30   1.7  
At4g15230.1 68417.m02333 ABC transporter family protein similar ...    29   2.2  
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    29   3.8  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    27   8.8  

>At4g15215.1 68417.m02332 ABC transporter family protein similar to
           PDR5-like ABC transporter [Spirodela polyrhiza]
           GI:1514643; contains Pfam profile PF00005: ABC
           transporter
          Length = 1390

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
 Frame = +2

Query: 185 KNTYNG*RTFNIFLTSRSNFYNTENN------DCQEILNFSSTCKHFNELVNTDQQLWK- 343
           K +YNG    + F+  +++ Y ++N+        +E L+FS+ C+     +   +++ + 
Sbjct: 197 KVSYNG-CLLSEFIPEKTSSYISQNDLHIPELSVRETLDFSACCQGIGSRMEIMKEISRR 255

Query: 344 EKLKELIPD 370
           EKLKE++PD
Sbjct: 256 EKLKEIVPD 264


>At4g15230.1 68417.m02333 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1326

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
 Frame = +2

Query: 194 YNG*RTFNIFLTSRSNFYNTENN------DCQEILNFSSTCKHFNELVNTDQQLWK-EKL 352
           YNG  + + F+  +++ Y ++N+        +E L+FS+ C+     +   +++ + EKL
Sbjct: 203 YNG-CSLSEFIPEKTSSYISQNDLHIPELSVRETLDFSACCQGIGSRMEIMKEISRMEKL 261

Query: 353 KELIPDAA 376
           +E+IPD A
Sbjct: 262 QEIIPDPA 269


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 583 ILQDFIKITSELGRCYACKRPIYFDWKCIMPEFC 684
           I QD + I  E  RCYAC  P Y+D  C +   C
Sbjct: 274 IYQDVL-IRDENQRCYACVLPFYYD-ACYICTHC 305


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 254 ENNDCQEILNFSSTCKHFNELVNTDQQLWKEKL 352
           +    + +L F STCK + EL++ D++   + L
Sbjct: 15  QRTPAESLLRFKSTCKKWYELISNDKRFMYKHL 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,229
Number of Sequences: 28952
Number of extensions: 247270
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)