Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060836.seq
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    90   3e-19
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 40/61 (65%), Positives = 48/61 (78%)
 Frame = +3

Query: 510 LPLFV*AVGITAFXLLLSLPVLAGAITILLTDRNXNTSFFDPAGGGDPXLYQHLF*FFGH 689
           +PLF  A+ IT+  LLL+LPVLAG + +L +DRN NTSF+ P GGGDP LYQHLF FFGH
Sbjct: 188 MPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGH 247

Query: 690 P 692
           P
Sbjct: 248 P 248



 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 30/63 (47%), Positives = 35/63 (55%)
 Frame = +1

Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
           PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L G
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTG 161

Query: 433 ISS 441
           ISS
Sbjct: 162 ISS 164



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 8   RDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 181
           +DI  LY                    EL  PGS  L G+ Q+YN  ++AH         
Sbjct: 18  KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFI 77

Query: 182 XXXXXXXXXN*LVPLILGAPDIAF 253
                    N LVPL++GAPD+A+
Sbjct: 78  IPALFGAFGNYLVPLMIGAPDVAY 101


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 279 TPTPLPYIINFKKNCRKWCRNRMNS 353
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,571
Number of Sequences: 5004
Number of extensions: 36971
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)