Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060835.seq
(685 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 189 6e-47
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 89 1e-16
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 87 4e-16
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 84 3e-15
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 84 3e-15
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 82 1e-14
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 80 4e-14
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 79 8e-14
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 79 8e-14
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 77 4e-13
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 75 2e-12
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 75 2e-12
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 73 7e-12
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 38 0.23
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 35 1.6
UniRef50_A4RWU6 Cluster: Predicted protein; n=2; Ostreococcus|Re... 35 2.1
UniRef50_Q53I48 Cluster: Homing endonuclease; n=1; Didymium irid... 34 2.8
UniRef50_A2XZG9 Cluster: Putative uncharacterized protein; n=2; ... 34 3.7
UniRef50_Q1RQW0 Cluster: Putative uncharacterized protein SAMT01... 33 6.5
UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep... 33 8.6
UniRef50_Q1CXG6 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 189 bits (460), Expect = 6e-47
Identities = 85/89 (95%), Positives = 85/89 (95%)
Frame = +1
Query: 1 RHEEHLNTIGPDDAPLLSLIYTGDGSIGHWAADESPXXXPPSPIRGSAKTLNSFASTAIR 180
RH EHLNTIGPDDAPLLSLIYTGDGSIGHWAADESP PPSPIRGSAKTLNSFASTAIR
Sbjct: 727 RHGEHLNTIGPDDAPLLSLIYTGDGSIGHWAADESPLSPPPSPIRGSAKTLNSFASTAIR 786
Query: 181 FRDSHGNLLPFRQVHEYKLCKPRAKIWPQ 267
FRDSHGNLLPFRQVHEYKLCKPRAKIWPQ
Sbjct: 787 FRDSHGNLLPFRQVHEYKLCKPRAKIWPQ 815
Score = 167 bits (407), Expect = 2e-40
Identities = 91/137 (66%), Positives = 97/137 (70%)
Frame = +3
Query: 273 KNETDGVIQSSLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGCGKTFPVTQLLKT 452
+NETDGVIQSSLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGCGKTFPVTQLLKT
Sbjct: 817 ENETDGVIQSSLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGCGKTFPVTQLLKT 876
Query: 453 KAFKGQYRVAVPTTELRSDGKTT*NSLPATFGESQPGKPLS*NQHPSWLSTKCTKCLEAS 632
KAFKGQYRVAVPTTELRS+ K + + P + + K
Sbjct: 877 KAFKGQYRVAVPTTELRSEWKDHMKLPSSDAWRVSTWETSLMKSAPVLVIDEVYKMPRGF 936
Query: 633 WX*LL*LDPALQFVILL 683
L DPALQFVILL
Sbjct: 937 LDLALVADPALQFVILL 953
Score = 101 bits (243), Expect = 1e-20
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVA 652
WKDHMKLPSSD WRVSTWETSLMKSAPVLVIDEVYKMPRGFL LALVA
Sbjct: 896 WKDHMKLPSSDAWRVSTWETSLMKSAPVLVIDEVYKMPRGFLDLALVA 943
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 88.6 bits (210), Expect = 1e-16
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 4/148 (2%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQS-SLRAASSDPTFFHR---LDQRADFAPQVSVQLIHITGFPGCG 419
KNL SNMKN DG++ + ++SS P+ R LD D A V L+HI GFPGCG
Sbjct: 820 KNLISNMKNGFDGILSTIDTPSSSSGPSPRERIYALDSICDVARTRCVDLVHIAGFPGCG 879
Query: 420 KTFPVTQLLKTKAFKGQYRVAVPTTELRSDGKTT*NSLPATFGESQPGKPLS*NQHPSWL 599
KT P+ QLLKT+AF +R++ PTTELR++ K P F + + + P +
Sbjct: 880 KTHPLQQLLKTRAF-SNFRISCPTTELRNEWKADMKPNPEEFWKFSTWESSLLKKGPILV 938
Query: 600 STKCTKCLEASWX*LL*LDPALQFVILL 683
+ K + DP+++FV++L
Sbjct: 939 IDEIYKLPRGYLDLSIIADPSIEFVVIL 966
Score = 69.3 bits (162), Expect = 8e-11
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = +2
Query: 482 CSHHRVAFRWKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVAGSS 661
C + WK MK + W+ STWE+SL+K P+LVIDE+YK+PRG+L L+++A S
Sbjct: 900 CPTTELRNEWKADMKPNPEEFWKFSTWESSLLKKGPILVIDEIYKLPRGYLDLSIIADPS 959
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 87.0 bits (206), Expect = 4e-16
Identities = 49/89 (55%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQSSLRAASSDPTF-FHRLDQRADFAPQVSVQLIHITGFPGCGKTF 428
KNL SNMKN DGV+ S SD LD D A SV+LIHI GFPGCGKT
Sbjct: 878 KNLVSNMKNGFDGVMASINPIRPSDAREKIVALDGLLDIARPRSVRLIHIAGFPGCGKTH 937
Query: 429 PVTQLLKTKAFKGQYRVAVPTTELRSDGK 515
P+T+LL T AF+ +++AVPTTELRS+ K
Sbjct: 938 PITKLLHTAAFR-DFKLAVPTTELRSEWK 965
Score = 72.9 bits (171), Expect = 7e-12
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVAGSS 661
WK+ MKL S WR TWE+SL+KSA +LVIDE+YK+PRG+L LA+ + SS
Sbjct: 964 WKELMKLSPSQAWRFGTWESSLLKSARILVIDEIYKLPRGYLDLAIHSDSS 1014
Score = 33.9 bits (74), Expect = 3.7
Identities = 27/82 (32%), Positives = 35/82 (42%)
Frame = +1
Query: 10 EHLNTIGPDDAPLLSLIYTGDGSIGHWAADESPXXXPPSPIRGSAKTLNSFASTAIRFRD 189
EH+ +G DA + +I GS G P + G A A+RF
Sbjct: 800 EHVIQLGMADATSIFMINHTAGSAGLPGHFSLRLGDQPRALNGGLA--QDLAVAALRFNI 857
Query: 190 SHGNLLPFRQVHEYKLCKPRAK 255
S G+LLP R VH Y+ RAK
Sbjct: 858 S-GDLLPTRSVHTYRSWPKRAK 878
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 84.2 bits (199), Expect = 3e-15
Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQSSLRAASSDPTF-FHRLDQRADFAPQVSVQLIHITGFPGCGKTF 428
KNL+SNMKN DG++ + +++ LD + D A + SV+LIHI GFPGCGK+F
Sbjct: 1038 KNLSSNMKNGFDGIMANIHPTKTNESREKILALDSQLDIAVRRSVRLIHIAGFPGCGKSF 1097
Query: 429 PVTQLLKTKAFKGQYRVAVPTTELRSDGK 515
P+++LL+T F+ ++VAVPT ELR++ K
Sbjct: 1098 PISRLLRTPTFR-NFKVAVPTVELRAEWK 1125
Score = 72.1 bits (169), Expect = 1e-11
Identities = 29/46 (63%), Positives = 39/46 (84%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLAL 646
WK + LP+S+ WR+ TWE+SL+KSA VLVIDE+YKMPRG++ LA+
Sbjct: 1124 WKAIIGLPTSEAWRIGTWESSLLKSARVLVIDEIYKMPRGYIDLAI 1169
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 84.2 bits (199), Expect = 3e-15
Identities = 51/101 (50%), Positives = 65/101 (64%), Gaps = 5/101 (4%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQS--SLRAASSDPTFFHR---LDQRADFAPQVSVQLIHITGFPGC 416
KNLASNMKN DG++ + +L + SS P+ R LD DFA +V LIH++GF GC
Sbjct: 819 KNLASNMKNGFDGILTTLAALSSLSSGPSPRDRIFTLDGICDFALPKTVDLIHLSGFAGC 878
Query: 417 GKTFPVTQLLKTKAFKGQYRVAVPTTELRSDGKTT*NSLPA 539
GKT P+ QLLKT F +RV PTT LRS+ K+ +LPA
Sbjct: 879 GKTHPIQQLLKTPHFH-NFRVVTPTTNLRSEWKSD-MALPA 917
Score = 70.1 bits (164), Expect = 5e-11
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVA 652
WK M LP+ WR STWE++L+K A +LVIDE+YK+PRG+L L+L+A
Sbjct: 909 WKSDMALPAHHNWRFSTWESALLKHAEILVIDEIYKLPRGYLDLSLIA 956
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 82.2 bits (194), Expect = 1e-14
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQS-SLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGCGKTF 428
KNL SNMKN DGV+ + + + LD D A +V LIHI GF GCGK+F
Sbjct: 985 KNLISNMKNGFDGVLANIDPQHTNEARDRLLSLDGSLDIAKPRTVSLIHIAGFAGCGKSF 1044
Query: 429 PVTQLLKTKAFKGQYRVAVPTTELRSDGKTT*NSLPA 539
P+ QLLKTK + Y++AVPT ELR++ K + S PA
Sbjct: 1045 PICQLLKTKPCR-NYKIAVPTVELRNEWKDSLKSSPA 1080
Score = 71.7 bits (168), Expect = 2e-11
Identities = 30/51 (58%), Positives = 41/51 (80%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVAGSS 661
WKD +K +D WR+ TWE+SL+KSA ++VIDEVYK+PRG+L LA+ A S+
Sbjct: 1071 WKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADST 1121
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 80.2 bits (189), Expect = 4e-14
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Frame = +3
Query: 252 KNLASNMKNETDGV-----IQSSLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGC 416
KNL SNMKN DGV + + R + ++D D P + ++H GF GC
Sbjct: 921 KNLISNMKNGFDGVLSLLDVSTGQRTGPTPKERIIQIDHYLDTNPGKTTPVVHFAGFAGC 980
Query: 417 GKTFPVTQLLKTKAFKGQYRVAVPTTELRSDGKT 518
GKT+P+ QLLKTK FK +RV+ PTTELR++ KT
Sbjct: 981 GKTYPIQQLLKTKLFK-DFRVSCPTTELRTEWKT 1013
Score = 68.9 bits (161), Expect = 1e-10
Identities = 28/57 (49%), Positives = 41/57 (71%)
Frame = +2
Query: 482 CSHHRVAFRWKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVA 652
C + WK M+L S WR +TWE+S++KS+ +LVIDE+YKMPRG+L L+++A
Sbjct: 1002 CPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMPRGYLDLSILA 1058
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 79.4 bits (187), Expect = 8e-14
Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +3
Query: 252 KNLASNMKNETDGVI-QSSLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGCGKTF 428
KNL SNMKN DGV+ Q++ S F LD D A V+LIHI GF GCGK++
Sbjct: 860 KNLISNMKNGFDGVMAQANPLDPKSARERFLMLDSCLDIAAPRRVRLIHIAGFAGCGKSW 919
Query: 429 PVTQLLKTKAFKGQYRVAVPTTELRSDGK 515
P++ LL+T AF+ +++AVPTTELR + K
Sbjct: 920 PISHLLRTPAFR-VFKLAVPTTELRDEWK 947
Score = 65.7 bits (153), Expect = 1e-09
Identities = 30/51 (58%), Positives = 37/51 (72%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVAGSS 661
WK M D WR TWE+SL+K+A VLVIDEVYKMPRG+L LA+ A ++
Sbjct: 946 WKALMDPRDQDKWRFGTWESSLLKTARVLVIDEVYKMPRGYLDLAIHADAA 996
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 79.4 bits (187), Expect = 8e-14
Identities = 45/91 (49%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQSSLRAASSDPTF--FHRLDQRADFAP-QVSVQLIHITGFPGCGK 422
KNL SN+KN DG++ SSL A+ LD ADF P + V LIHI GF GCGK
Sbjct: 996 KNLVSNLKNGFDGLV-SSLPASDRTNLLPLIQALDHTADFPPARPPVGLIHIAGFAGCGK 1054
Query: 423 TFPVTQLLKTKAFKGQYRVAVPTTELRSDGK 515
++P+ QLL T+ F+ +RV PTTELR + K
Sbjct: 1055 SYPIQQLLATQTFR-HFRVVTPTTELRHEWK 1084
Score = 70.9 bits (166), Expect = 3e-11
Identities = 32/48 (66%), Positives = 37/48 (77%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVA 652
WK +KL WRVSTWET+L K A VLVIDEVYK+PRG+L LAL+A
Sbjct: 1083 WKRALKLEGPSSWRVSTWETALAKRASVLVIDEVYKLPRGYLDLALLA 1130
Score = 39.9 bits (89), Expect = 0.056
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +1
Query: 106 PXXXPP--SPIRGSAKTLNSFASTAIRFRDSHGNLLPFRQVHEYKLCKPRAKIWPQT*KM 279
P PP +PI + FA A+RFR + LP RQVH Y + PRAK K
Sbjct: 946 PPLTPPGFTPITEPTPATSPFALAALRFRLNR-QPLPIRQVHAYSIALPRAKNLVSNLKN 1004
Query: 280 RLMELYN--PASERHHQTPL 333
L + PAS+R + PL
Sbjct: 1005 GFDGLVSSLPASDRTNLLPL 1024
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 77.0 bits (181), Expect = 4e-13
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQSSLRAASSDPTFFHRL---DQRADFAPQVSVQLIHITGFPGCGK 422
KNL SNMKN DG++ SSL +S P+ +L D D A V LIHI GF GCGK
Sbjct: 913 KNLISNMKNGFDGIM-SSLTDSSKGPSPREKLTTLDSLIDVAAPREVSLIHIAGFAGCGK 971
Query: 423 TFPVTQLLKTKAFKGQYRVAVPTTELRSDGK 515
T P+ +LL+T F +R++ PT ELRS+ K
Sbjct: 972 THPIQKLLQTSPFH-DFRISCPTNELRSEWK 1001
Score = 68.5 bits (160), Expect = 1e-10
Identities = 27/57 (47%), Positives = 42/57 (73%)
Frame = +2
Query: 482 CSHHRVAFRWKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVA 652
C + + WK M+ + +VWR STWE+SL+K + +LVIDE+YK+PRG+L L+++A
Sbjct: 991 CPTNELRSEWKRDMQPTAENVWRFSTWESSLLKHSEILVIDEIYKLPRGYLDLSILA 1047
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 74.9 bits (176), Expect = 2e-12
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQSSLRAASSDPTF-FHRLDQRADFAPQVSVQLIHITGFPGCGKTF 428
KNL SNMKN DG+ ++ P LD D + +IHI GFPGCGK+
Sbjct: 848 KNLISNMKNGFDGITSQLSGPSNKSPKMKLLELDATIDVSFPRKCDVIHIAGFPGCGKSH 907
Query: 429 PVTQLLKTKAFKGQYRVAVPTTELRSDGK 515
P+ +LL+T AF+ +R++VPT ELRS+ K
Sbjct: 908 PIQKLLQTPAFR-HFRLSVPTNELRSEWK 935
Score = 72.9 bits (171), Expect = 7e-12
Identities = 29/51 (56%), Positives = 40/51 (78%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVAGSS 661
WK + LP S+VWR+ TWET+L KS+ +LV+DE+YK+PRG+L L L+A S
Sbjct: 934 WKRDLNLPESEVWRLCTWETALFKSSNILVVDEIYKLPRGYLDLILLADPS 984
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 74.5 bits (175), Expect = 2e-12
Identities = 47/102 (46%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Frame = +3
Query: 252 KNLASNMKNETDGV---IQSSLR--AASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGC 416
KNL SNMKN DGV I+ S+R S F LD D A +V + H+ GF GC
Sbjct: 947 KNLISNMKNGFDGVMSTIEPSIRHQPGHSPREKFIALDAMIDLARPKTVSMFHLAGFAGC 1006
Query: 417 GKTFPVTQLLKTKAFKGQYRVAVPTTELRSDGKTT*NSLPAT 542
GKT P+ LL T+ F +RV+ PTTELR++ K N LPA+
Sbjct: 1007 GKTKPLQSLLSTRPFH-SFRVSTPTTELRNEWKKDMN-LPAS 1046
Score = 65.7 bits (153), Expect = 1e-09
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVA 652
WK M LP+S +R TWE+SL+K +LVIDE+YK+PRG+L L ++A
Sbjct: 1037 WKKDMNLPASQAFRFCTWESSLLKQTKILVIDEIYKLPRGYLDLCILA 1084
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 72.9 bits (171), Expect = 7e-12
Identities = 45/95 (47%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Frame = +3
Query: 252 KNLASNMKNETDGVIQSSLRAASSDPTFFHR-------LDQRADFAPQVSVQLIHITGFP 410
KNL SNMKN DGV+ A+ DP H LD + V LIH+ GFP
Sbjct: 877 KNLISNMKNGFDGVL------ANIDPNHPHEARDRLLALDGSIEVHAPRKVSLIHLAGFP 930
Query: 411 GCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSDGK 515
GCGKT P+ LLKT F Y+VAVPT ELR++ K
Sbjct: 931 GCGKTKPIQALLKTSLF-ADYKVAVPTVELRAEWK 964
Score = 68.9 bits (161), Expect = 1e-10
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = +2
Query: 509 WKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVA 652
WK + L + WR+STWE+SL+K+A +LVIDEVYKMPRG++ LA+ A
Sbjct: 963 WKADLALKTGQAWRLSTWESSLLKTASILVIDEVYKMPRGYVDLAVAA 1010
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 37.9 bits (84), Expect = 0.23
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 524 KLPSSDVWRVSTWETSLMKSAP-VLVIDEVYKMPRGFLXLALVAGSS 661
K+P + V+ T+E +L++ AP V+VID+ K+P GF+ +V S
Sbjct: 878 KIPKAPVYMFKTFEKALLQPAPSVVVIDDYTKIPAGFIEAYIVTNPS 924
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 521 MKLPSSDVWRVSTWETSLMKSA--PVLVIDEVYKMPRGFLXLAL 646
+K P+ + V T+ET + + + PVL++DE KMP G+L L
Sbjct: 1104 LKPPTESSYSVQTYETPIRQPSLGPVLIVDEYGKMPAGWLETVL 1147
>UniRef50_A4RWU6 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 691
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 479 RCSHHRVAFRWKD---HMKLPSSDVWRVSTWETSLMKSAPVLVIDE 607
RCS++ V F W D H+ +P+S+VW++ SA VL+ DE
Sbjct: 473 RCSNNGVKFSWLDAGVHVPIPTSNVWKLFKLRARDHHSALVLMRDE 518
>UniRef50_Q53I48 Cluster: Homing endonuclease; n=1; Didymium
iridis|Rep: Homing endonuclease - Didymium iridis
Length = 209
Score = 34.3 bits (75), Expect = 2.8
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 486 PTTELRSDGKTT*NSLPATFGESQ 557
PTT++R DGK + NSL A FGE Q
Sbjct: 96 PTTKVRCDGKASLNSLAAQFGEDQ 119
>UniRef50_A2XZG9 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 403
Score = 33.9 bits (74), Expect = 3.7
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 393 HITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTE--LRSDGKTT*NSLPATFGESQPGK 566
H+ FP CGK F LK+ KG + P T + S K +S PAT ++P
Sbjct: 178 HVCPFPACGKRFTSDSKLKSHV-KGHEKTGTPITAQYVPSSDKPQSSSKPATPATTKPTT 236
Query: 567 P 569
P
Sbjct: 237 P 237
>UniRef50_Q1RQW0 Cluster: Putative uncharacterized protein SAMT0126;
n=2; Streptomyces ambofaciens|Rep: Putative
uncharacterized protein SAMT0126 - Streptomyces
ambofaciens ATCC 23877
Length = 192
Score = 33.1 bits (72), Expect = 6.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 487 PPPSCVPME--RPHETPFQRRLASLNLGNLSHEISTRLGY 600
PPP+C P E RP PF +R ++ N N H + R Y
Sbjct: 14 PPPACPPPEAPRPGPRPFLQRPSTRNTANRPHPLPNRPDY 53
>UniRef50_A2SXZ3 Cluster: Replicase; n=2; Lolium latent virus|Rep:
Replicase - Lolium latent virus
Length = 440
Score = 32.7 bits (71), Expect = 8.6
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 509 WKDHM-KLPSSDVWRVSTWETSLMKSAPVLVI-DEVYKMPRGFLXL 640
W++ M + PS + V T+E ++M+SAP +V+ D+ K+P G++ L
Sbjct: 30 WRNKMTEFPS---FLVQTYEAAMMESAPQMVVFDDYGKLPHGYIDL 72
>UniRef50_Q1CXG6 Cluster: Putative uncharacterized protein; n=1;
Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
protein - Myxococcus xanthus (strain DK 1622)
Length = 256
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 488 HHRVAFRWKDHMKLPSSDVWRVSTWETSL-MKSAPVLVIDEVYKMPRGFL 634
HHRVA+R+++H+ L + R W T ++ A L+IDE P F+
Sbjct: 34 HHRVAYRYREHLPLIGEPLLR---WRTPRGVRPAVPLLIDEGEAFPGSFV 80
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,801,212
Number of Sequences: 1657284
Number of extensions: 15928313
Number of successful extensions: 44317
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 42579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44280
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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