Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060835.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   3.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 390 IHITGFPGCGKTFPVTQLLK 449
           IH    PGCGK +  T  LK
Sbjct: 314 IHSCHIPGCGKVYGKTSHLK 333


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 398 YWISWLWENFPCHSASQNQSI*RPVQSRCSHHRVAFRWKDHMKLPSSDVWRVST 559
           Y I+ +W   P       +S+ R  Q +CSH  V    ++H+ L   + + + T
Sbjct: 303 YAIATMWHETPEEMMEFLKSVFRLDQDQCSHRIV----REHLGLKHDNYYELET 352


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 25  IGPDDAPLLSLIYTGDGSIGHWAADESPXXXPPSPI 132
           + P+ APL S +    GS    A   +    PP PI
Sbjct: 88  VAPEPAPLASPLVQEPGSSTTSATSGAVMASPPMPI 123


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 290 SYTIQPPSGIIRP 328
           SY IQPP G + P
Sbjct: 336 SYCIQPPCGQLNP 348


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,359
Number of Sequences: 336
Number of extensions: 3817
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)