Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060835.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    27   1.9  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   3.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   3.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   4.4  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     26   5.8  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   7.7  

>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 483 VPTTELRSDGKTT*NSLPATFGESQP 560
           +PT+ LRSD   T   L A+FGE+ P
Sbjct: 115 IPTSLLRSDSTLTAKLLVASFGETIP 140


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 203  SYHFDKFMSTSSVSLGQK 256
            S HFD  +ST SVSLG K
Sbjct: 992  SLHFDDNVSTDSVSLGNK 1009


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 485 SHHRVAFRWKDHM--KLPSSDV--WRVSTWETSLMKSAPVLVIDEVYKMPR 625
           SH R     K H+  K P  DV  WR+   E  +++++   V   +Y++PR
Sbjct: 398 SHSRTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPR 448


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 384 QLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELR 503
           QL+ I+G  GCGK+  +   L   + K    V +  TE R
Sbjct: 648 QLLIISGDTGCGKSTQIPAFLLENSTKNGKAVKIYVTEPR 687


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 372 QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTT 494
           +  +  +   GFP  GK+  +TQL  T++    Y     TT
Sbjct: 60  RTGIGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTT 100


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 390 IHITGFPGCGKTFPVTQLLKT 452
           I + G+PGCGKT+  + +  T
Sbjct: 643 ILLFGYPGCGKTYLASAISST 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,591
Number of Sequences: 5004
Number of extensions: 63871
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)