Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060835.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 34 0.12
12_01_0779 + 7129879-7130398,7130585-7130664 33 0.16
10_06_0140 + 11147019-11147791,11148301-11150524 31 0.85
09_04_0273 + 16292553-16293002 29 4.5
07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498... 28 6.0
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 28 7.9
07_03_0663 - 20451445-20452442,20452528-20452729 28 7.9
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 7.9
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 28 7.9
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 33.9 bits (74), Expect = 0.12
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 393 HITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTE--LRSDGKTT*NSLPATFGESQPGK 566
H+ FP CGK F LK+ KG + P T + S K +S PAT ++P
Sbjct: 176 HVCPFPACGKRFTSDSKLKSHV-KGHEKTGTPITAQYVPSSDKPQSSSKPATPATTKPTT 234
Query: 567 P 569
P
Sbjct: 235 P 235
>12_01_0779 + 7129879-7130398,7130585-7130664
Length = 199
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 437 SASQNQSI*RPVQSRCSHHRVAFRWKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYK 616
S+S S P + R HHR A R ++ + +VWR + WE + + +V+ E
Sbjct: 13 SSSSPSSSPPPPRRRHRHHRRAARRTHPVEAEAEEVWRGAQWEAAWPRRTKPVVVAEDEP 72
Query: 617 MPRGFLXLALVAG 655
G + A AG
Sbjct: 73 PSGGVIVGACTAG 85
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 31.1 bits (67), Expect = 0.85
Identities = 26/86 (30%), Positives = 39/86 (45%)
Frame = +3
Query: 372 QVSVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELRSDGKTT*NSLPATFGE 551
Q +++I I GF G GKT Q+ ++ A Q+ P +R+ GK + L
Sbjct: 177 QGQLKVISIVGFGGLGKTLLARQIYESDAVAAQFH---PRIWVRAAGKNAEDVLMDIL-- 231
Query: 552 SQPGKPLS*NQHPSWLSTKCTKCLEA 629
Q G P+ + H S L CLE+
Sbjct: 232 QQLGMPVH-HCHASNLVVNLRNCLES 256
>09_04_0273 + 16292553-16293002
Length = 149
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 539 DVWRVSTWETSLMKSAPVLVIDEVYKMPRGF-LXLALVAGSSPPICHP 679
D WR +TW L+ +L+ Y+ F + + L+AG+ P P
Sbjct: 17 DGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRVKLLAGAKPASIPP 64
>07_01_0664 +
4979892-4979931,4980040-4980236,4982340-4982723,
4983499-4983549,4983659-4983741,4983818-4983917,
4984410-4984488,4984957-4985080,4985605-4985711,
4985810-4985938,4987004-4987089,4987200-4987367,
4987477-4987637,4987721-4987752,4987866-4988047,
4988386-4988465,4988885-4988950,4989060-4989349,
4990433-4990540,4991521-4991618,4991680-4991782,
4992269-4992345,4992449-4992520,4992579-4992670,
4992909-4992989,4993290-4993392,4994334-4994492,
4994696-4995085
Length = 1213
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/68 (25%), Positives = 27/68 (39%)
Frame = +3
Query: 273 KNETDGVIQSSLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGCGKTFPVTQLLKT 452
K + +G +Q+ A PT D P+ ++ G PGC K+ ++L T
Sbjct: 749 KRDEEGDLQAERGTAPPSPT-----STSLDVVPKAEGLIVFFPGIPGCAKSALCKEILTT 803
Query: 453 KAFKGQYR 476
G R
Sbjct: 804 PGGLGDNR 811
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 273 KNETDGVIQSSLRAASSDPTFFHRLD 350
KNE+ G +QS L+A +D +FF LD
Sbjct: 255 KNESVGNLQSKLKAGIADKSFFLVLD 280
>07_03_0663 - 20451445-20452442,20452528-20452729
Length = 399
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 366 RSRLFDQGDGKKWGLMMPLG 307
R R+ ++GDG +WG+M+ G
Sbjct: 360 RRRMEEEGDGAEWGVMLGFG 379
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 49 LSLIYTGDGSIGHWAADESPXXXPPSPIRGSAKTLNSFASTAIR 180
L+L Y+GDGS ++ P SP GS L+S T ++
Sbjct: 98 LNLDYSGDGSDSSQTGEDVPTADQASP-SGSGTLLDSMVQTGVQ 140
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 469 STESLFPPPSCVPMERPHETPFQRR 543
+ + F PP VP+ RPHE RR
Sbjct: 214 TVQECFNPPIVVPVSRPHEVEKTRR 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,462,971
Number of Sequences: 37544
Number of extensions: 475650
Number of successful extensions: 1393
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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