Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060835.seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                29   3.5  
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            28   6.1  
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               28   8.1  

>SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 288 GVIQSSLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGCGKTFPVTQLL 446
           GV+QS L   + D T  H  + R +     +    H+   PG GK+ P   LL
Sbjct: 243 GVLQSPLDNIADDQTVIHGTESRKESGTSKTGSTEHMAFVPGSGKSKPKKNLL 295


>SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 407 SWLWENFPCHSASQNQSI*RPVQSRCSHHRVAFRWKDHMKLPSSDVWRVS 556
           +WL  N P +S    +++      RC   +VA +     +L S DV+RVS
Sbjct: 49  TWLLANQPRNSTEPTKALSETSSDRCQTVKVAIKLSLKRRLTSVDVYRVS 98


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 642 ARXRKPRGILYTSSIT-KTGADFMREV-SQVETRQTSLEGSFMWSFHRNATRWW 487
           AR   P  I+  ++ T K+ A F+ E+  Q + R    E    W F+R    WW
Sbjct: 835 ARRGTPALIVSDNAKTFKSAAKFLNELYDQPDIRTYCEENRIQWKFNRERAPWW 888


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
 Frame = +2

Query: 365  RPTSFRAAHSHY-WISWLWENFPCHSASQNQSI*RPVQSRCSHHRVAFRWKDH---MKLP 532
            RP S RA    Y W  +  E  P           R  + R    R    +  H   +  P
Sbjct: 1068 RPYSPRAERERYDWPPYDRERSPGRERRSRSPYGREYRDRSPLRRPPAEYDRHGRPLPPP 1127

Query: 533  SSDVWRVSTWETSLMKSAPVL 595
              D WR   WE    KS P L
Sbjct: 1128 PDDYWRREAWERERRKSPPPL 1148


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 475 ESLFPPPSCVPMERPHETPFQRRLASLNLGNLSHEISTR-LGYRRSVQNASRLPGSSSCS 651
           +SLF  PS   ++RP +TP   R      G+ S     R LG   S+ ++S +P + + S
Sbjct: 744 QSLFGHPSDSQLDRPDDTPTSPRQPRSKWGHPSSSTVQRVLGDISSLSDSSDIPPNVTNS 803

Query: 652 WIQPSNLSS 678
            I  S   +
Sbjct: 804 TIGQSGFQT 812


>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 583 STRLGYRRSVQNASRLPGSSSCSWIQPSN 669
           + R  +RR+V N S+ P S SC  + PS+
Sbjct: 470 NARAKFRRTVCNTSQTPMSPSCDQLTPSS 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,524,538
Number of Sequences: 59808
Number of extensions: 491352
Number of successful extensions: 1450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)