Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060835.seq
         (685 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070889-1|AAL48511.1|  706|Drosophila melanogaster LD46223p pro...    31   1.1  
AE013599-574|AAM68847.1|  702|Drosophila melanogaster CG12769-PB...    31   1.1  
AE013599-573|AAF59146.3|  706|Drosophila melanogaster CG12769-PA...    31   1.1  
AE014297-996|AAF54422.3| 4671|Drosophila melanogaster CG9492-PA ...    30   3.4  

>AY070889-1|AAL48511.1|  706|Drosophila melanogaster LD46223p
           protein.
          Length = 706

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 98  SAAQ*PMDPSPV*IRLSSGASSGPMVLRCSSC 3
           S  Q P  P+P    LS+G  S PM  RC  C
Sbjct: 63  SELQEPRSPTPTPTNLSTGPHSPPMTFRCERC 94


>AE013599-574|AAM68847.1|  702|Drosophila melanogaster CG12769-PB,
           isoform B protein.
          Length = 702

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 98  SAAQ*PMDPSPV*IRLSSGASSGPMVLRCSSC 3
           S  Q P  P+P    LS+G  S PM  RC  C
Sbjct: 59  SELQEPRSPTPTPTNLSTGPHSPPMTFRCERC 90


>AE013599-573|AAF59146.3|  706|Drosophila melanogaster CG12769-PA,
           isoform A protein.
          Length = 706

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 98  SAAQ*PMDPSPV*IRLSSGASSGPMVLRCSSC 3
           S  Q P  P+P    LS+G  S PM  RC  C
Sbjct: 63  SELQEPRSPTPTPTNLSTGPHSPPMTFRCERC 94


>AE014297-996|AAF54422.3| 4671|Drosophila melanogaster CG9492-PA
            protein.
          Length = 4671

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 276  NETDGVIQSSLRAASSDPTFFHRLDQRADFAPQVSVQLIHITGFPGCGK 422
            NE    I + +   S D   F+ L++  DF   V VQ +   G PG G+
Sbjct: 2686 NEWGDQITNEIVRQSMDMKGFYSLEKPGDFTTIVDVQYVAAMGLPGGGR 2734


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,586,396
Number of Sequences: 53049
Number of extensions: 754383
Number of successful extensions: 1857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1857
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)