Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060835.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    29   4.1  
AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical ...    28   7.1  
AL023835-2|CAA19487.2|  592|Caenorhabditis elegans Hypothetical ...    28   7.1  

>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 378 SVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYRVAVPTTELR 503
           S  ++ I+G  GCGKT  V Q +  +A +    V V  T+ R
Sbjct: 196 SCNVVIISGGTGCGKTTQVPQFILDEAHENNKHVRVMVTQPR 237


>AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical
           protein Y68A4A.5 protein.
          Length = 572

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/59 (20%), Positives = 27/59 (45%)
 Frame = +2

Query: 503 FRWKDHMKLPSSDVWRVSTWETSLMKSAPVLVIDEVYKMPRGFLXLALVAGSSPPICHP 679
           F + DH+++    +    T +  + +++     D +++ P G     L+A  +P  C P
Sbjct: 301 FNYTDHLQITGGALTFTGTGQAQIAETSVTCGSDAIWQDPNGIRGNTLIASIAPQTCLP 359


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 384 QLIHITGFPGCGKTFPVTQLL-KTKAFKGQYRVAVPTTE 497
           +L+ I G PG GKTF +T LL +    K Q  V  PT E
Sbjct: 83  KLVCIQGPPGTGKTFTLTLLLCRLIQQKKQVVVLAPTRE 121


>AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2c protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 39  RTTAQPYLHW*WIHRSLGCRRIPXXXPPFPHSRL 140
           R  ++ Y H+ W+H  L  + +    PP P  ++
Sbjct: 260 RQVSRRYKHFDWLHEQLSAKYVLIPIPPLPEKQV 293


>AL023835-2|CAA19487.2|  592|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2b protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 39  RTTAQPYLHW*WIHRSLGCRRIPXXXPPFPHSRL 140
           R  ++ Y H+ W+H  L  + +    PP P  ++
Sbjct: 286 RQVSRRYKHFDWLHEQLSAKYVLIPIPPLPEKQV 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,816
Number of Sequences: 27780
Number of extensions: 370375
Number of successful extensions: 914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)