Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060835.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    30   1.2  
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ...    29   2.2  
At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR ...    27   8.8  
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR...    27   8.8  
At5g38250.1 68418.m04611 serine/threonine protein kinase, putati...    27   8.8  
At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr...    27   8.8  
At4g15380.1 68417.m02350 cytochrome P450 family protein similar ...    27   8.8  

>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1165

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 345 LDQRADFAPQVSVQLIHITGFPGCGKTFPVTQLLKT 452
           L+++ D       ++I + G PG GKT  V +L KT
Sbjct: 217 LEEKLDLVKYKGTRVIGVVGMPGIGKTTLVKELYKT 252


>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 815

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 387 LIHITGFPGCGKTFPVTQLLKTKAFKGQYR 476
           ++ ++G PGCGKT  VT+L      +G+++
Sbjct: 191 VVVVSGPPGCGKTTLVTKLCDDPEIEGEFK 220


>At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 809

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 378 SVQLIHITGFPGCGKTFPVTQLLKTKAFKGQYR 476
           SV  + ++  PGCGKT  V++L      KG+++
Sbjct: 186 SVVTLVVSAPPGCGKTTLVSRLCDDPDIKGKFK 218


>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
           class), putative (RPS4) domain signature TIR-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPS4 (GI:11357255). False intron created at
           intron 2 to escape a frameshift in the BAC sequence.
          Length = 1217

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 345 LDQRADFAPQVSVQLIHITGFPGCGKTFPVTQLLKT 452
           L+++ D       ++I + G PG GKT  + +L KT
Sbjct: 217 LEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKT 252


>At5g38250.1 68418.m04611 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 579

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 157 SFASTAIRFRDSHGNLLPFRQVHEYKLCKPR 249
           SF+ST +R  D   NL P+R +  + +C PR
Sbjct: 113 SFSSTPLR-SDLFQNLQPYRNLTVFYMCDPR 142


>At4g30520.1 68417.m04333 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 648

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 55  LIYTGDGSIGHWAADESPXXXPPSPIRGSAKTLNSFASTAIRFRDSHGN 201
           L+  GDG    WAA  +      + I  S KT++S ++T++   D+H N
Sbjct: 570 LMLEGDGLAERWAASHNHSHFYHANI--SFKTISSLSTTSVSRLDAHCN 616


>At4g15380.1 68417.m02350 cytochrome P450 family protein similar to
           CYTOCHROME P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]
          Length = 517

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 161 LLQQLFGLETLTAISYHFDKFMSTSSVSLGQKFGLKHEK*D 283
           L+  LF  ET T ISY FD+ + +  V   +K  + H++ D
Sbjct: 235 LVVSLFKKET-TVISYRFDELLESILVEHEKKLDVHHQRTD 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,406
Number of Sequences: 28952
Number of extensions: 364283
Number of successful extensions: 1029
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)