Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060834.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   2.5  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   3.4  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   4.4  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   5.9  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   5.9  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -3

Query: 582 NANETFQKSPIQEHKHHSTQALFCAYFSRNVFQTVLCKSTTH*ISFNSLHSVRSSHSRAI 403
           N N+T  K+  Q++K+ S  A   +    ++ Q  +  S       NSL + +S +S   
Sbjct: 204 NENDTIFKANFQQNKYESLHAKQISASDLSLHQEFVSASIVQQPELNSLLTSQSKNSTPS 263

Query: 402 RTKSSS 385
            + SSS
Sbjct: 264 ESDSSS 269


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +3

Query: 522 PEYCGVCALELDSFGMSRLHYLSKNHAKNLRK 617
           P  C VC     S      H  SK H KNLRK
Sbjct: 269 PIMCMVCNKNFRSQNQLENHENSKKHKKNLRK 300


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +3

Query: 519 EPEYCGVCALELDSFGMSRLHYLSKNHAKNLRKWVSKSNDGGSNQKE 659
           E  YC VC        +   H  SK H K +++  S S    SN  E
Sbjct: 241 EAFYCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSSPSTTSNTNE 287


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 447 KIFNALWTYKGQFEKHS----*RNMHKIEPEY 530
           KIFNA WT  G+ + +S     RN H   P+Y
Sbjct: 227 KIFNADWTIDGEKKDYSLFKMIRNTHLKNPQY 258


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 609 DSSHDFLKGNANETFQKSPIQEHKHH 532
           D+SHDF +    E   K+PI + K H
Sbjct: 295 DASHDFGREATPEILPKTPIPKRKPH 320


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = -3

Query: 573 ETFQKSPIQEHKHHSTQAL---FCAYFSRNVFQTVLCKSTTH*ISFNSLHSVRSSHSRAI 403
           +T  K P+ EHK   T  L       FSR+  +T  C S+    + N  H   S+     
Sbjct: 213 KTLSKQPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSS----NSNPFHLASSNVKTLD 268

Query: 402 RTKSSSEWV 376
            +    EWV
Sbjct: 269 ASLDQGEWV 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,120
Number of Sequences: 5004
Number of extensions: 58988
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)