Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060834.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850...    34   0.12 
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    31   0.65 
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266...    29   4.6  
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044...    28   8.0  

>10_05_0043 +
           8503979-8504407,8506484-8506624,8506865-8506975,
           8507746-8508330
          Length = 421

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 489 KHS*RNMHKIEPEYCGVCALELDSFGMSRLHYLSKNHAKNLRK 617
           KH  +    ++P  C VC ++ D+  + R+H   K H KNL +
Sbjct: 266 KHIKKKPKVVQPLTCEVCKIQCDTPEVLRIHKTGKKHKKNLER 308


>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -3

Query: 444 NSLHSV--RSSHSRAIRTKSSSEWVLIG*RPKHWSWS-WSKHEVRRGSWWMI 298
           +S H V  RS H  A     +    + G RP HW  S   +   RRG WW++
Sbjct: 520 SSAHEVFWRSCHGVAYLCMENVVTEMAGCRPTHWPRSALVRQRRRRGGWWLV 571


>05_04_0342 -
           20425141-20425311,20425415-20425558,20426506-20426622,
           20426719-20426835,20427533-20427678,20428208-20428293,
           20428780-20428889
          Length = 296

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 370 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 489
           N N  GR  GP G +++R     + + Y+   G  KDS+K
Sbjct: 153 NYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVK 192


>01_06_1593 +
           38502884-38502993,38503580-38503665,38504352-38504497,
           38504817-38504933,38505028-38505144,38505858-38506001,
           38506099-38506251
          Length = 290

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 370 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 489
           N N  GR  GP G +++R     + + Y+   G  KDS+K
Sbjct: 153 NYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVK 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,783,861
Number of Sequences: 37544
Number of extensions: 357012
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)