Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060834.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)                    32   0.38 
SB_29044| Best HMM Match : NIDO (HMM E-Value=7.9e-28)                  30   1.5  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          30   2.0  
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)          29   2.7  
SB_19955| Best HMM Match : AFP (HMM E-Value=0.14)                      29   4.7  
SB_54677| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_7051| Best HMM Match : RVT_1 (HMM E-Value=0.064)
          Length = 756

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +1

Query: 397 GPDG-PAMRRPNRVERVKRYLMRCGLTKDSLKNIPREIC-TK*SLSTVVFVLLNWTLLEC 570
           GPDG PA+++ NR     R L RCG++ D +  + R +  +    ++VVF  L   L + 
Sbjct: 118 GPDGIPALKKANRRLYAIRQLKRCGVSTDDIIVVYRSLVRSTLEYASVVFADLPRYLSDS 177

Query: 571 LV 576
           LV
Sbjct: 178 LV 179


>SB_29044| Best HMM Match : NIDO (HMM E-Value=7.9e-28)
          Length = 258

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
 Frame = +2

Query: 131 FYKMNSR--EEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNSMGDIGLTTKVLDRLII 304
           FY   S   + +  N D G +EE   +PR      E S  FGN+   I  T   L  ++ 
Sbjct: 34  FYPFGSEHGDSFVENLDDGCSEEIILVPRLLFHRREQSTLFGNTFQVILATDGDLSFVMF 93

Query: 305 HQDPLR--TSCLDQDQDQCLGLYPIKTHSEEDLVRMAL 412
           H + L   T  L+      LG  P +    +D V   L
Sbjct: 94  HYETLEWTTGMLNGGDRYGLGGVPAQAGLLDDAVSYTL 131


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 335  DQDQDQCLGLYPIKTHSEEDLVRMALLCEDLTEWRELK 448
            + D+ +C  LYP + + E DL     L +D T+W  +K
Sbjct: 3232 NSDEGRC-ALYPARCNFETDLCNWQQLTDDDTDWTRMK 3268


>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
          Length = 611

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 471 YKGQFEKHS*RNMH-KIEPEYCGVCALELDSFGMSRL-HYLSKNHAKNLRKWVSKSNDGG 644
           YKG  EK     +H K      GV      +   + L H LSK   + ++ W+  SN+ G
Sbjct: 141 YKGNLEKDPIEMVHTKFLKWLLGVNRYCSSNACRAELGHSLSKQKCRAIKLWLKLSNNNG 200

Query: 645 SNQK 656
           +N+K
Sbjct: 201 NNEK 204


>SB_19955| Best HMM Match : AFP (HMM E-Value=0.14)
          Length = 691

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -3

Query: 609 DSSH--DFLKGNANETFQKSPIQE---HKHHSTQALFCAYFSRNVFQTVLCKSTTH*ISF 445
           DS+H  DF +  A+ T Q SP ++   ++ H T +  C  FSR    TV   +      +
Sbjct: 607 DSAHCTDFTRQTAH-TVQTSPDRQRTLYRPHQTDSAHCTDFSRQTAHTVQTSADRQRTLY 665

Query: 444 NSLHSVRSSH 415
             LH   S+H
Sbjct: 666 R-LHQTDSAH 674


>SB_54677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 376 NPFGRGFGPDGPAMRRPNRVE--RVKRYLMRCGLTKDSL 486
           NP  RG GPDG    R NR++  R++  L++ GL+  SL
Sbjct: 284 NPSIRGMGPDG----RSNRIKKLRMQEALLKLGLSLPSL 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,621,865
Number of Sequences: 59808
Number of extensions: 421264
Number of successful extensions: 1126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)