Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060834.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical p...    30   1.8  
U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical p...    29   2.4  
AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical ...    29   2.4  
U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily ass...    29   3.1  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF036706-6|AAK39275.2|  481|Caenorhabditis elegans Glutamyl(e)/g...    29   4.1  
AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U21323-10|AAW30670.1|  805|Caenorhabditis elegans Hypothetical
           protein C45G9.10b protein.
          Length = 805

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 50  QFSLKTNRTGDYWRVFVQASKFIMSIPF 133
           QF++++  TG ++R+F   S  I++IPF
Sbjct: 177 QFAMQSQETGIFYRIFKHDSNTIITIPF 204


>U21323-9|AAA62553.1|  971|Caenorhabditis elegans Hypothetical
           protein C45G9.10a protein.
          Length = 971

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +2

Query: 50  QFSLKTNRTGDYWRVFVQASKFIMSIPF 133
           QF++++  TG ++R+F   S  I++IPF
Sbjct: 343 QFAMQSQETGIFYRIFKHDSNTIITIPF 370


>U10438-13|ABB88243.1|  235|Caenorhabditis elegans Hypothetical
           protein B0280.17 protein.
          Length = 235

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 370 NQNPFGRGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLK 489
           N NP GR  GP G  +R+  +    K ++   G TKD  K
Sbjct: 127 NTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKDDAK 166


>AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical
           protein ZK250.6 protein.
          Length = 843

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 62  KTNRTGDYWRVFVQASKFIMSIPFYKM--NSREEYEMNEDCGW 184
           KT+R  + W + V+ +  +MS+   ++  N++  Y  N DCGW
Sbjct: 455 KTSRINN-WSIGVKYTLKLMSVDGQRLLYNTKHTYTNNTDCGW 496


>U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 38 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 316 GVLVDDQTVQDLGRQTNIPH*ISKCIAVFVIPYLSSRKSRWLF 188
           G + D + +  LG + +IP  +  C+  F++P+L   + R+ F
Sbjct: 282 GTVDDIEAIGQLGLEYDIPVHVDACLGGFLLPFLEEDEIRYDF 324


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +3

Query: 516 IEPEYCGVCALELDSFGMSRLHYLSKNHAKNLRKWVSKSNDGGSNQKEIP 665
           +EP YC  C   + S      H  SK H +N +K       G    ++ P
Sbjct: 68  VEPLYCKACRKSIKSENAMTDHVASKKHKENEKKIEDDVKKGPKQPRKKP 117


>AF036706-6|AAK39275.2|  481|Caenorhabditis elegans
           Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
           protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 546 LELDSFGMSRLHYLSKNHAKNLRK 617
           LE++ F    L YL+KNH  NL K
Sbjct: 417 LEIEVFNSESLEYLAKNHQLNLAK 440


>AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical
           protein F23H11.4b protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 194 PPRLPRRKIRNNEYSNAFGNSMGDIGLTTKVLDRLIIHQDP 316
           PP  P R + N+     FGN +G++ L    L+  I  QDP
Sbjct: 25  PPVKPPRAVANSTAVQNFGNVLGELRLN---LNETISSQDP 62


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 194 PPRLPRRKIRNNEYSNAFGNSMGDIGLTTKVLDRLIIHQDP 316
           PP  P R + N+     FGN +G++ L    L+  I  QDP
Sbjct: 25  PPVKPPRAVANSTAVQNFGNVLGELRLN---LNETISSQDP 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,532,018
Number of Sequences: 27780
Number of extensions: 323836
Number of successful extensions: 907
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)