Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060834.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44800.1 68415.m05575 oxidoreductase, 2OG-Fe(II) oxygenase fa...    31   0.95 
At3g15050.1 68416.m01904 calmodulin-binding family protein simil...    30   1.3  
At1g19030.1 68414.m02369 hypothetical protein                          29   2.2  
At1g24450.1 68414.m03080 ribonuclease III family protein contain...    27   8.8  

>At2g44800.1 68415.m05575 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase SP|Q96330
           {Arabidopsis thaliana}, SP|Q07512 {Petunia hybrida};
           contains Pfam profile PF03171: oxidoreductase,
           2OG-Fe(II) oxygenase family
          Length = 357

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 197 PRLPRRKIRNNEYSNAFGNSMGDIGLTTKVLDRLIIHQDPLRTSCLDQDQDQC--LGLYP 370
           P++P R +       A G+S+G    T  V+D  ++HQ  LR+  + +    C   G + 
Sbjct: 25  PQVPDRYVLPPSQRPALGSSLGTSETTLPVIDLSLLHQPFLRSLAIHEISMACKEFGFFQ 84

Query: 371 IKTH 382
           +  H
Sbjct: 85  VINH 88


>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 259

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 351 WSWSWSKHEVRRGSWWMIKRSRTLVVRPISPIEFP 247
           W WSW +  +    W +  R++  VV+PI P + P
Sbjct: 199 WGWSWKERWIAARPWEI--RAQCYVVKPIKPSKKP 231


>At1g19030.1 68414.m02369 hypothetical protein
          Length = 398

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 381 WVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRT 283
           W ++  R   W     K+ +RRGS+W++K + T
Sbjct: 121 WRILSARRSLWVELVKKYLIRRGSFWLVKENTT 153


>At1g24450.1 68414.m03080 ribonuclease III family protein contains
           similarity to Swiss-Prot:P51837 ribonuclease III (EC
           3.1.26.3) (RNase III) [Coxiella burnetii]
          Length = 191

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 263 DIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDLVRMALLC 418
           DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D    A+LC
Sbjct: 102 DIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDASNSAILC 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,250
Number of Sequences: 28952
Number of extensions: 305945
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)