Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060833.seq
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2FJX4 Cluster: Surface antigen BspA-like; n=1; Trichom...    33   4.9  
UniRef50_Q4D432 Cluster: Putative uncharacterized protein; n=2; ...    33   6.5  
UniRef50_A5FN51 Cluster: Glycosyl transferase, family 4; n=1; Fl...    33   8.6  
UniRef50_Q9U0K9 Cluster: Putative uncharacterized protein PFD038...    33   8.6  

>UniRef50_A2FJX4 Cluster: Surface antigen BspA-like; n=1;
           Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
           - Trichomonas vaginalis G3
          Length = 414

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +2

Query: 449 VIISYLANNALI*GRILLNPCNNIVGIQKLCRMC*LYVNIICSCFT*KNIFSKYLL*TIV 628
           VIIS L N ++I G      C N++ I  L  +  +  N   +C+   +  +   L TI 
Sbjct: 213 VIISNLYNLSII-GNYSFQNCQNLLNISSLYNLISIGNNAFDNCYNLMSFSNLNKLATIG 271

Query: 629 NFSFRNGQHLK-----LNLANLTY 685
            FSF+N  +L+      NLA + Y
Sbjct: 272 EFSFQNCHNLRNISTLYNLATINY 295


>UniRef50_Q4D432 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1448

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +3

Query: 129 LKTSFYFYYIFYNSGVNFNIFFRYP 203
           L +SFYFYY +Y  GV F IFF +P
Sbjct: 60  LSSSFYFYYYYYFYGVLF-IFFLFP 83


>UniRef50_A5FN51 Cluster: Glycosyl transferase, family 4; n=1;
           Flavobacterium johnsoniae UW101|Rep: Glycosyl
           transferase, family 4 - Flavobacterium johnsoniae UW101
          Length = 323

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 443 WSVIISYLANNALI*GRILLNPCNNIVGIQKLCRM-C*LYVNIICSCFT*KNIFSKYLL* 619
           WS++I+Y+    LI     ++  N I G+  L  M   LYVN+    FT    F KY++ 
Sbjct: 114 WSILIAYVVAIGLINAYNFMDGINGITGLYTLVVMGSLLYVNVNIQLFT-DGEFIKYVII 172

Query: 620 TIVNFSFRN 646
             + F F N
Sbjct: 173 ASLVFLFFN 181


>UniRef50_Q9U0K9 Cluster: Putative uncharacterized protein PFD0380c;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            PFD0380c - Plasmodium falciparum (isolate 3D7)
          Length = 1629

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 66   LRKEKFLKYLTIRHLCI*KINLKTSFYFYYIFYNSGVNFNIFFRY 200
            ++   FL   + + L   KIN K  +YFY +F+   +++N F +Y
Sbjct: 1356 IKSSVFLNIKSKKKLKTNKINKKKKYYFYKLFHKFRMSYNHFIKY 1400


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,361,630
Number of Sequences: 1657284
Number of extensions: 11016006
Number of successful extensions: 21823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21815
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)