Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060833.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   5.9  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   7.8  

>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 459 EIITLHDLHTTKVITEVPQLKK 394
           E+ITL D+H +++ T+ P +KK
Sbjct: 30  ELITLLDIHYSELFTKNPWMKK 51


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -2

Query: 460 RNNHAPRFTYD*SYYRSTPVKKIQYICINNKNTTALFPNEVPHTQTSPHT 311
           + +H P F  + + Y STP K +    I++ +   +  N      +  HT
Sbjct: 119 QRHHEPSFNSEKASYTSTPYKNVAPKVIDSPSARHMHSNSPSFPPSQSHT 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,840
Number of Sequences: 5004
Number of extensions: 50961
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)