Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060833.seq
         (686 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022783-1|AAH22783.1|  986|Homo sapiens USP34 protein protein.        30   8.9  
AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific prot...    30   8.9  
AB018272-1|BAA34449.1| 1196|Homo sapiens KIAA0729 protein protein.     30   8.9  
AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein.     30   8.9  

>BC022783-1|AAH22783.1|  986|Homo sapiens USP34 protein protein.
          Length = 986

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 408 PQLKKSNIYVLITKIRLLSFLMKFRTLKHLHIP 310
           P+++ S  Y+L++ I   SF   FR+ + LHIP
Sbjct: 118 PRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIP 150


>AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific
            proteinase 34 protein.
          Length = 3395

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 408  PQLKKSNIYVLITKIRLLSFLMKFRTLKHLHIP 310
            P+++ S  Y+L++ I   SF   FR+ + LHIP
Sbjct: 2527 PRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIP 2559


>AB018272-1|BAA34449.1| 1196|Homo sapiens KIAA0729 protein protein.
          Length = 1196

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 408 PQLKKSNIYVLITKIRLLSFLMKFRTLKHLHIP 310
           P+++ S  Y+L++ I   SF   FR+ + LHIP
Sbjct: 328 PRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIP 360


>AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein.
          Length = 3412

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 408  PQLKKSNIYVLITKIRLLSFLMKFRTLKHLHIP 310
            P+++ S  Y+L++ I   SF   FR+ + LHIP
Sbjct: 2544 PRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIP 2576


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,079,347
Number of Sequences: 237096
Number of extensions: 1555295
Number of successful extensions: 1964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1964
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)