Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060833.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical p...    28   7.2  

>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 18  CFYTLLDKNTLGTS*TLRKEKFLKYLTIRHLCI*KIN-LKTSFYFYYIFYNSGVNFNIFF 194
           CFY ++  + L +  T+    FLKY  +  L + ++  +KT   FY+    S +   I F
Sbjct: 94  CFYQIMQLSVLASHLTIYGTFFLKYRMVTKLQMSQVEIMKTYVVFYFPLILSTIFVVIIF 153

Query: 195 R 197
           +
Sbjct: 154 K 154


>Z81489-11|CAJ30223.1|  323|Caenorhabditis elegans Hypothetical
           protein C55A1.14 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/87 (25%), Positives = 41/87 (47%)
 Frame = +2

Query: 197 ISNTFKNLNQYIFIVIFDVLLGLAHYGEWAIPFSLVYLGMWRCLSVRNFIRKESSRIFVI 376
           I + F N N  I +++ + + G+      A+ F+   L +   +S+R +    ++RI   
Sbjct: 160 IVSYFNNKNLGIAVMMLETIFGITSVSFMALIFASALLYIPIMISIRQYSNLPTARIDQP 219

Query: 377 NTYILDFFNWGTSVITLVVCKSWSVII 457
             Y+L    W T V+   + KS  V+I
Sbjct: 220 QKYVL----WQTMVV--FILKSIYVLI 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,917
Number of Sequences: 27780
Number of extensions: 272511
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)