Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060832.seq
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    27   0.11 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    27   0.11 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.77 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.77 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.77 
AF264718-1|AAF75271.1|  125|Tribolium castaneum putative cytochr...    24   1.3  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   2.3  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   2.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.2  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 261 TIIATSSPSSVNSHFVILTASEITISRASKLFTAPTIF*CSSLNSSHNFKVSALSLFSRY 82
           T   T++ S++NS  +I    E  IS ++ L+T  +     + +S  NF  S+ S+F  Y
Sbjct: 11  TTTTTTTSSALNSTPLI----EFNISTSNYLYTPSSTIDLYNTSSVSNFNESSSSVFPNY 66

Query: 81  FKILS 67
            +  S
Sbjct: 67  IRTTS 71


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 261 TIIATSSPSSVNSHFVILTASEITISRASKLFTAPTIF*CSSLNSSHNFKVSALSLFSRY 82
           T   T++ S++NS  +I    E  IS ++ L+T  +     + +S  NF  S+ S+F  Y
Sbjct: 11  TTTTTTTSSALNSTPLI----EFNISTSNYLYTPSSTIDLYNTSSVSNFNESSSSVFPNY 66

Query: 81  FKILS 67
            +  S
Sbjct: 67  IRTTS 71


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
           +F +T++++ + D  + +L + +W  LE+  YN
Sbjct: 32  KFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYN 64


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
           +F +T++++ + D  + +L + +W  LE+  YN
Sbjct: 32  KFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYN 64


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 573 QFAITIKKL-ETDLTSDMLLSGSWKTLEFKPYN 668
           +F +T++++ + D  + +L + +W  LE+  YN
Sbjct: 32  KFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYN 64


>AF264718-1|AAF75271.1|  125|Tribolium castaneum putative
          cytochrome P450 monooxigenaseCYP4Q6 protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 98 RCFLDTLKFFRSIPF 54
          RC  +TL+ F S+PF
Sbjct: 49 RCIKETLRLFPSVPF 63


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 LCEEFNEEHQKIVGAVKSLEALE 187
           LC+E   E Q I+G   SLE L+
Sbjct: 278 LCDEICNEGQTILGISYSLEKLK 300


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 LCEEFNEEHQKIVGAVKSLEALE 187
           LC+E   E Q I+G   SLE L+
Sbjct: 278 LCDEICNEGQTILGISYSLEKLK 300


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 406 PLVKRKVDSITDIVQENLSEIRKGIDNLSENVRNAIKK 519
           P  +++  S+TD+  ++ + + +  +  S +V NAI+K
Sbjct: 697 PSPQQRSPSVTDLSTKDGTTVPESNNGSSPSVLNAIEK 734


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,470
Number of Sequences: 336
Number of extensions: 3136
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)